Note: This is a public test instance of Red Hat Bugzilla. The data contained within is a snapshot of the live data so any changes you make will not be reflected in the production Bugzilla. Email is disabled so feel free to test any aspect of the site that you want. File any problems you find or give feedback at bugzilla.redhat.com.

Bug 1307383

Summary:

clustal-omega: FTBFS in rawhide

Product:

[Fedora] Fedora

Reporter:

Fedora Release Engineering <releng>

Component:

clustal-omega

Assignee:

Mukundan Ragavan <nonamedotc>

Status:

CLOSED RAWHIDE

QA Contact:

Fedora Extras Quality Assurance <extras-qa>

Severity:

unspecified

Docs Contact:

Priority:

unspecified

Version:

rawhide

CC:

nonamedotc, yselkowi

Target Milestone:

---

Target Release:

---

Hardware:

Unspecified

OS:

Unspecified

Whiteboard:

Fixed In Version:

Doc Type:

Bug Fix

Doc Text:

Story Points:

---

Clone Of:

Environment:

Last Closed:

2016-02-17 04:17:17 UTC

Type:

---

Regression:

---

Mount Type:

---

Documentation:

---

CRM:

Verified Versions:

Category:

---

oVirt Team:

---

RHEL 7.3 requirements from Atomic Host:

Cloudforms Team:

---

Target Upstream Version:

Embargoed:

Bug Depends On:

Bug Blocks:

1305208

Attachments:

Description	Flags
build.log	none
root.log	none
state.log	none

Description Fedora Release Engineering 2016-02-13 21:08:33 UTC

Your package clustal-omega failed to build from source in current rawhide.

http://koji.fedoraproject.org/koji/taskinfo?taskID=12809494

For details on mass rebuild see https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

Comment 1 Fedora Release Engineering 2016-02-13 21:08:35 UTC

Created attachment 1124219 [details]
build.log

Comment 2 Fedora Release Engineering 2016-02-13 21:08:36 UTC

Created attachment 1124220 [details]
root.log

Comment 3 Fedora Release Engineering 2016-02-13 21:08:37 UTC

Created attachment 1124221 [details]
state.log

Comment 4 Yaakov Selkowitz 2016-02-17 02:51:10 UTC

src/hhalign/util-C.h defines float log2(float) and float log10(float) inline functions which conflict with those in <math.h>.  (The proper name for these signatures in the C standard library are log2f and log10f.)  Removing those two functions fixes the build (std::log2 and std::log10 are used in their place).

Comment 5 Upstream Release Monitoring 2016-02-17 04:10:07 UTC

nonamedotc's clustal-omega-1.2.1-9.fc24 completed http://koji.fedoraproject.org/koji/buildinfo?buildID=736472

Comment 6 Mukundan Ragavan 2016-02-17 04:17:17 UTC

Thanks Yaakov for not just showing me how to fix it, but also for the explanation of what the code does...