Note: This is a public test instance of Red Hat Bugzilla. The data contained within is a snapshot of the live data so any changes you make will not be reflected in the production Bugzilla. Email is disabled so feel free to test any aspect of the site that you want. File any problems you find or give feedback at bugzilla.redhat.com.

Bug 1706040

Summary: python-biopython FTBFS in rawhide/F31: AttributeError: module 'PIL.Image' has no attribute 'VERSION'
Product: [Fedora] Fedora Reporter: Miro Hrončok <mhroncok>
Component: python-biopythonAssignee: Antonio T. (sagitter) <anto.trande>
Status: CLOSED RAWHIDE QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: high Docs Contact:
Priority: unspecified    
Version: rawhideCC: alex, bazanluis20, dominik, jaruga
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Unspecified   
Whiteboard:
Fixed In Version: Doc Type: If docs needed, set a value
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2019-06-13 11:06:42 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Bug Depends On: 1600316    
Bug Blocks: 1700317, 1686977, 1732841    
Attachments:
Description Flags
build.log from Koji
none
root.log from Koji none

Description Miro Hrončok 2019-05-03 12:33:29 UTC
Created attachment 1562380 [details]
build.log from Koji

python-biopython-1.73-2.fc31 fails to build in rawhide:

BUILDSTDERR: ======================================================================
BUILDSTDERR: ERROR: test_render_KGML_transparency (test_KGML_graphics.KGMLPathwayTest)
BUILDSTDERR: Rendering of KGML to PDF, with color alpha channel.
BUILDSTDERR: ----------------------------------------------------------------------
BUILDSTDERR: Traceback (most recent call last):
BUILDSTDERR:   File "/builddir/build/BUILD/python-biopython-1.73/python3/Tests/test_KGML_graphics.py", line 182, in test_render_KGML_transparency
BUILDSTDERR:     kgml_map.draw(p[1].output_stem + '_transparency.pdf')
BUILDSTDERR:   File "/builddir/build/BUILD/python-biopython-1.73/python3/build/lib.linux-x86_64-3.7/Bio/Graphics/KGML_vis.py", line 148, in draw
BUILDSTDERR:     self.drawing.drawImage(imfilename, 0, 0)
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/pdfgen/canvas.py", line 946, in drawImage
BUILDSTDERR:     imgObj = pdfdoc.PDFImageXObject(name, image, mask=mask)
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/pdfbase/pdfdoc.py", line 2102, in __init__
BUILDSTDERR:     self.loadImageFromA85(src)
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/pdfbase/pdfdoc.py", line 2110, in loadImageFromA85
BUILDSTDERR:     imagedata = pdfutils.makeA85Image(source,IMG=IMG,detectJpeg=True)
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/pdfbase/pdfutils.py", line 38, in makeA85Image
BUILDSTDERR:     raw = img.getRGBData()
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/lib/utils.py", line 886, in getRGBData
BUILDSTDERR:     annotateException('\nidentity=%s'%self.identity())
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/lib/utils.py", line 1390, in annotateException
BUILDSTDERR:     rl_reraise(t,v,b)
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/lib/utils.py", line 144, in rl_reraise
BUILDSTDERR:     raise v
BUILDSTDERR:   File "/usr/lib64/python3.7/site-packages/reportlab/lib/utils.py", line 871, in getRGBData
BUILDSTDERR:     if Image.VERSION.startswith('1.1.7'): im.load()
BUILDSTDERR: AttributeError: module 'PIL.Image' has no attribute 'VERSION'
BUILDSTDERR: identity=[ImageReader@0x7f73aabf6940 filename='KEGG/map03070.png']
BUILDSTDERR: ----------------------------------------------------------------------

Full log attached.

This is not Python 3.8 specific, but blocks the rebuild for Python 3.8.

Comment 1 Miro Hrončok 2019-05-03 12:33:58 UTC
Created attachment 1562393 [details]
root.log from Koji

Comment 2 Antonio T. (sagitter) 2019-06-13 11:06:42 UTC
Fixed.