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Bug 1712818
| Summary: | python-tables fails to build with Python 3.8 | ||||||
|---|---|---|---|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Miro Hrončok <mhroncok> | ||||
| Component: | python-tables | Assignee: | Thibault North <thibault.north> | ||||
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> | ||||
| Severity: | high | Docs Contact: | |||||
| Priority: | unspecified | ||||||
| Version: | rawhide | CC: | thibault.north, zbyszek | ||||
| Target Milestone: | --- | ||||||
| Target Release: | --- | ||||||
| Hardware: | Unspecified | ||||||
| OS: | Unspecified | ||||||
| Whiteboard: | |||||||
| Fixed In Version: | python-tables-3.5.2-1.fc31 | Doc Type: | If docs needed, set a value | ||||
| Doc Text: | Story Points: | --- | |||||
| Clone Of: | Environment: | ||||||
| Last Closed: | 2019-06-02 13:08:57 UTC | Type: | Bug | ||||
| Regression: | --- | Mount Type: | --- | ||||
| Documentation: | --- | CRM: | |||||
| Verified Versions: | Category: | --- | |||||
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||
| Cloudforms Team: | --- | Target Upstream Version: | |||||
| Embargoed: | |||||||
| Bug Depends On: | |||||||
| Bug Blocks: | 1686977 | ||||||
| Attachments: |
|
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Created attachment 1571952 [details] Full log from Copr python-tables 3.4.4-7.fc31 and 3.5.1-1.fc31 fail to build with Python 3.8.0a4: ====================================================================== ERROR: None (tables.tests.test_basics.NoNodeCacheOpenFile) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_basics.py", line 565, in test09e_renameGroup self.h5file.rename_node('/', name='agroup', newname='agroup_') File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 1701, in rename_node obj._f_rename(newname, overwrite) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 605, in _f_rename self._f_move(newname=newname, overwrite=overwrite) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.BasicReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.ZlibReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.BloscReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.LZOReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.Bzip2ReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.ShuffleReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.Fletcher32ReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.ShuffleFletcher32ReadTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.OneHalfTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.UpperBoundTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ====================================================================== ERROR: None (tables.tests.test_indexes.LowerBoundTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/tests/test_indexes.py", line 566, in test10d_moveIndex table.move(agroup, "table2") File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/leaf.py", line 625, in move self._f_move(newparent, newname, overwrite, createparents) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/node.py", line 689, in _f_move self._g_move(newparent, newname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/table.py", line 2678, in _g_move itgroup._g_move(newigroup, newiname) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/group.py", line 603, in _g_move self._v_file._update_node_locations(oldpath, newpath) File "/builddir/build/BUILDROOT/python-tables-3.4.4-7.fc31.x86_64/usr/lib64/python3.8/site-packages/tables/file.py", line 2852, in _update_node_locations for nodepath in cache: File "/usr/lib64/python3.8/weakref.py", line 223, in keys for k, wr in self.data.items(): RuntimeError: dictionary keys changed during iteration ---------------------------------------------------------------------- Ran 6191 tests in 276.473s FAILED (errors=12, skipped=44) This blocks pandas. Full log attached.