Note: This is a public test instance of Red Hat Bugzilla. The data contained within is a snapshot of the live data so any changes you make will not be reflected in the production Bugzilla. Email is disabled so feel free to test any aspect of the site that you want. File any problems you find or give feedback at bugzilla.redhat.com.
Bug 1794277
| Summary: | python-nibabel fails to build with numpy 1.18 | ||||||
|---|---|---|---|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Miro Hrončok <mhroncok> | ||||
| Component: | python-nibabel | Assignee: | Igor Raits <igor.raits> | ||||
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> | ||||
| Severity: | unspecified | Docs Contact: | |||||
| Priority: | unspecified | ||||||
| Version: | rawhide | CC: | cstratak, igor.raits, mhroncok, neuro-sig, sanjay.ankur | ||||
| Target Milestone: | --- | ||||||
| Target Release: | --- | ||||||
| Hardware: | Unspecified | ||||||
| OS: | Unspecified | ||||||
| Whiteboard: | |||||||
| Fixed In Version: | Doc Type: | If docs needed, set a value | |||||
| Doc Text: | Story Points: | --- | |||||
| Clone Of: | Environment: | ||||||
| Last Closed: | 2020-02-02 19:40:32 UTC | Type: | Bug | ||||
| Regression: | --- | Mount Type: | --- | ||||
| Documentation: | --- | CRM: | |||||
| Verified Versions: | Category: | --- | |||||
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||
| Cloudforms Team: | --- | Target Upstream Version: | |||||
| Embargoed: | |||||||
| Bug Depends On: | |||||||
| Bug Blocks: | 1750908, 1785415 | ||||||
| Attachments: |
|
||||||
Created attachment 1657207 [details]
Build log for py3.9 copr attached.
I updated nibabel to the newest version, and it builds fine with python3.9, and numpy from the COPR too.
Build log attached.
|
python-nibabel fails to build with Python 3.9.0a2. Traceback (most recent call last): File "/usr/lib/python3.9/site-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/builddir/build/BUILD/nibabel-2.5.1/nibabel/tests/test_minc1.py", line 144, in test_old_namespace mf = MincFile(netcdf_file(EG_FNAME)) File "/builddir/build/BUILD/nibabel-2.5.1/nibabel/externals/netcdf.py", line 238, in __init__ self._read() File "/builddir/build/BUILD/nibabel-2.5.1/nibabel/externals/netcdf.py", line 528, in _read self._read_var_array() File "/builddir/build/BUILD/nibabel-2.5.1/nibabel/externals/netcdf.py", line 614, in _read_var_array data = ndarray.__new__(ndarray, shape, dtype=dtype_, ValueError: Non-string object detected for the array ordering. Please pass in 'C', 'F', 'A', or 'K' instead This seems like a numpy problem, rather than Python 3.9 For the build logs, see: https://copr-be.cloud.fedoraproject.org/results/@python/python3.9/fedora-rawhide-x86_64/01176515-python-nibabel/ For all our attempts to build python-nibabel with Python 3.9, see: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/package/python-nibabel/ Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.9: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/ Let us know here if you have any questions. Python 3.9 will be included in Fedora 33. To make that update smoother, we're building Fedora packages with early pre-releases of Python 3.9. A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon. We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.