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Bug 1808661
| Summary: | rdkit fails to build in Fedora 32+ | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Miro Hrončok <mhroncok> |
| Component: | rdkit | Assignee: | Gianluca Sforna <giallu> |
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | giallu, than |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| URL: | https://koschei.fedoraproject.org/package/rdkit | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | If docs needed, set a value | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2020-03-04 18:56:24 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | |||
| Bug Blocks: | 1750908, 1803234, 1785415 | ||
Dear Maintainer, your package has not been built successfully in 32. Action is required from you. If you can fix your package to build, perform a build in koji, and either create an update in bodhi, or close this bug without creating an update, if updating is not appropriate [1]. If you are working on a fix, set the status to ASSIGNED to acknowledge this. Following the latest policy for such packages [2], your package will be orphaned if this bug remains in NEW state more than 8 weeks. A week before the mass branching of Fedora 33 according to the schedule [3], any packages not successfully rebuilt at least on Fedora 31 will be retired regardless of the status of this bug. [1] https://fedoraproject.org/wiki/Updates_Policy [2] https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/ [3] https://fedoraproject.org/wiki/Releases/33/Schedule it's fixed in rdkit-2019.03.3-5.fc33 and rdkit-2019.03.3-5.fc32 |
Description of problem: Package rdkit fails to build from source in Fedora rawhide and Fedora 32: [ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/usr/include/catch2 -I/usr/include/inchi -I/usr/include/python3.8 -I/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -Wl,--as-needed -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -O2 -g -DNDEBUG -fPIC -std=gnu++11 -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/catch_sgroups.cpp: In function 'void ____C_A_T_C_H____T_E_S_T____2()': /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/GraphMol/catch_sgroups.cpp:212:6: error: could not convert '{{{{{{1.0e+0, 3.0e+0, 0.0}}, {{5.0e+0, 7.0e+0, 0.0}}, {{0.0, 0.0, 0.0}}}}, {{{{2.0e+0, 4.0e+0, 0.0}}, {{6.0e+0, 8.0e+0, 0.0}}, {{0.0, 0.0, 0.0}}}}}}' from '<brace-enclosed initializer list>' to 'std::vector<std::array<std::array<double, 3>, 3> >' 212 | }}; | ^ | | | <brace-enclosed initializer list> Version-Release number of selected component (if applicable): 2019.03.3-5 Steps to Reproduce: fedpkg build Additional info: This package is tracked by Koschei. See: https://koschei.fedoraproject.org/package/rdkit This blocks the Python 3.9 rebuild of the package.