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Bug 1856959
| Summary: | NCL error while trying to read GRIB2 files | ||
|---|---|---|---|
| Product: | [Fedora] Fedora EPEL | Reporter: | Jim E <edgar1196> |
| Component: | gdal | Assignee: | markusN <neteler> |
| Status: | CLOSED ERRATA | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | epel8 | CC: | alex, devrim, jmlich83, mmahut, oliver, orion, pavel.lisy, pertusus, praiskup, scitech-bugs, volker27 |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | x86_64 | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Fixed In Version: | Doc Type: | If docs needed, set a value | |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2020-08-04 03:37:59 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
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Description
Jim E
2020-07-14 19:08:23 UTC
valgrind points to the issue: ==15801== Command: ncl -n filename="rap.t00z.awp200f00.grib2" nvars=0 coords=0 ftype="GRIB" singleElemDims=(/"none"/) timePeriodSuffix=True /tmp/tmp15791.ncl ==15801== Copyright (C) 1995-2019 - All Rights Reserved University Corporation for Atmospheric Research NCAR Command Language Version 6.6.2 The use of this software is governed by a License Agreement. See http://www.ncl.ucar.edu/ for more details. ==15801== Use of uninitialised value of size 8 ==15801== at 0x6D4708B: g2_getfld (in /usr/lib64/libgdal.so.26.0.4) ==15801== by 0x56E4C5: ??? (in /usr/bin/ncl) ==15801== by 0x4F9582: _NclFileCreate (in /usr/bin/ncl) ==15801== by 0x4C25B9: _NclOpenFile (in /usr/bin/ncl) ==15801== by 0x5B092C: _NclIAddFile (in /usr/bin/ncl) ==15801== by 0x5878C8: CallINTRINSIC_FUNC_CALL (in /usr/bin/ncl) ==15801== by 0x59261C: _NclExecute (in /usr/bin/ncl) ==15801== by 0x46F4D9: yyparse (in /usr/bin/ncl) ==15801== by 0x4657EF: NclDriver (in /usr/bin/ncl) ==15801== by 0xC9796A2: (below main) (in /usr/lib64/libc-2.28.so) ==15801== ==15801== ==15801== Process terminating with default action of signal 11 (SIGSEGV): dumping core ==15801== Bad permissions for mapped region at address 0x56E0AE ==15801== at 0x6D4708B: g2_getfld (in /usr/lib64/libgdal.so.26.0.4) ==15801== by 0x56E4C5: ??? (in /usr/bin/ncl) ==15801== by 0x4F9582: _NclFileCreate (in /usr/bin/ncl) ==15801== by 0x4C25B9: _NclOpenFile (in /usr/bin/ncl) ==15801== by 0x5B092C: _NclIAddFile (in /usr/bin/ncl) ==15801== by 0x5878C8: CallINTRINSIC_FUNC_CALL (in /usr/bin/ncl) ==15801== by 0x59261C: _NclExecute (in /usr/bin/ncl) ==15801== by 0x46F4D9: yyparse (in /usr/bin/ncl) ==15801== by 0x4657EF: NclDriver (in /usr/bin/ncl) ==15801== by 0xC9796A2: (below main) (in /usr/lib64/libc-2.28.so) the issue is that gdal modified its internal copy of the g2clib to change g2_getfld() to use 6 arguments and they inserted that argument in the middle. So ncl is trying to call the standard 5 arg g2_getfld() and ending up with gdal's 6 arg version which leads to chaos. So, I can work around this in ncl by being sure to link g2clib before gdal. But gdal really should get fixed to prevent other users from having this issue. FEDORA-2020-3d7cbc5979 has been submitted as an update to Fedora 32. https://bodhi.fedoraproject.org/updates/FEDORA-2020-3d7cbc5979 Indeed, ncl seems to be working alright except for this. Looking forward to the new update. Cheers. FEDORA-2020-3d7cbc5979 has been pushed to the Fedora 32 testing repository. In short time you'll be able to install the update with the following command: `sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2020-3d7cbc5979` You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-3d7cbc5979 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. FEDORA-EPEL-2020-b7ff36d3e7 has been pushed to the Fedora EPEL 8 testing repository. You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2020-b7ff36d3e7 See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates. This package has changed maintainer in the Fedora. Reassigning to the new maintainer of this component. FEDORA-2020-3d7cbc5979 has been pushed to the Fedora 32 stable repository. If problem still persists, please make note of it in this bug report. FEDORA-2020-3d7cbc5979 has been pushed to the Fedora 32 stable repository. If problem still persists, please make note of it in this bug report. FEDORA-2020-3d7cbc5979 has been pushed to the Fedora 32 stable repository. If problem still persists, please make note of it in this bug report. FEDORA-2020-3d7cbc5979 has been pushed to the Fedora 32 stable repository. If problem still persists, please make note of it in this bug report. FEDORA-EPEL-2020-b7ff36d3e7 has been pushed to the Fedora EPEL 8 stable repository. If problem still persists, please make note of it in this bug report. |