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Bug 1859845

Summary: libsbml-5.18.0-15.fc33 FTBFS: No targets specified and no makefile found.
Product: [Fedora] Fedora Reporter: Petr Pisar <ppisar>
Component: libsbmlAssignee: Zbigniew Jędrzejewski-Szmek <zbyszek>
Status: CLOSED NEXTRELEASE QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: rawhideCC: neuro-sig, trpost, zbyszek
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Unspecified   
URL: https://koschei.fedoraproject.org/package/libsbml?collection=f33
Whiteboard:
Fixed In Version: Doc Type: If docs needed, set a value
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2020-08-04 23:18:50 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Bug Depends On:    
Bug Blocks: 1803234    

Description Petr Pisar 2020-07-23 07:06:10 UTC
libsbml-5.18.0-15.fc33 fails to build in Fedora 33:
+ cd libSBML-5.18.0-Source
+ mkdir -p build
+ pushd build
[...]
+ /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.9 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.9.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_JAVA:BOOL=ON -DWITH_JAVASCRIPT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CSHARP:BOOL=ON -DWITH_XERCES:BOOL=OFF -DWITH_LIBXML:BOOL=ON -DWITH_EXPAT:BOOL=OFF -DWITH_SWIG:BOOL=ON -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON ..
[...]
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_SKIP_INSTALL_RPATH
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    RUBY_VENDORLIB_DIR
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/libSBML-5.18.0-Source/build/x86_64-redhat-linux-gnu
+ /usr/bin/make -O -j6 V=1 VERBOSE=1
make: *** No targets specified and no makefile found.  Stop.

A difference between passing and failing build root is at <https://koschei.fedoraproject.org/build/8625240>. An upgrade of cmake from 3.17.3-2.fc33 to 3.18.0-3.fc33 is suspicious.

Comment 1 Antonio T. sagitter 2020-07-23 10:33:04 UTC
Fixed with build release 5.18.0-16

Comment 2 Miro Hrončok 2020-08-04 23:18:50 UTC
The following builds were made after this report was opened: libsbml-5.18.0-16.fc33