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Bug 1959011
| Summary: | python-fsspec fails to build with Python 3.10: MemoryError in lz4 | ||
|---|---|---|---|
| Product: | [Fedora] Fedora | Reporter: | Miro Hrončok <mhroncok> |
| Component: | python-fsspec | Assignee: | Elliott Sales de Andrade <quantum.analyst> |
| Status: | CLOSED RAWHIDE | QA Contact: | Fedora Extras Quality Assurance <extras-qa> |
| Severity: | unspecified | Docs Contact: | |
| Priority: | unspecified | ||
| Version: | rawhide | CC: | mhroncok, python-sig, quantum.analyst, thrnciar |
| Target Milestone: | --- | ||
| Target Release: | --- | ||
| Hardware: | Unspecified | ||
| OS: | Unspecified | ||
| Whiteboard: | |||
| Fixed In Version: | python-fsspec-2021.6.0-1.fc35~bootstrap | Doc Type: | If docs needed, set a value |
| Doc Text: | Story Points: | --- | |
| Clone Of: | Environment: | ||
| Last Closed: | 2021-06-13 03:43:16 UTC | Type: | Bug |
| Regression: | --- | Mount Type: | --- |
| Documentation: | --- | CRM: | |
| Verified Versions: | Category: | --- | |
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |
| Cloudforms Team: | --- | Target Upstream Version: | |
| Embargoed: | |||
| Bug Depends On: | 1959006 | ||
| Bug Blocks: | 1890881, 1927309, 1927313, 1968947, 1968988 | ||
This is a mass-posted update. Sorry if it is not 100% accurate to this bugzilla.
The Python 3.10 rebuild is in progress in a Koji side tag. If you manage to fix the problem, please commit the fix in the rawhide branch, but don't build the package in regular rawhide.
You can either build the package in the side tag, with:
$ fedpkg build --target=f35-python
Or you can the build and we will eventually build it for you.
Note that the rebuild is still in progress, so not all (build) dependencies of this package might be available right away.
Thanks.
See also https://fedoraproject.org/wiki/Changes/Python3.10
If you have general questions about the rebuild, please use this mailing list thread: https://lists.fedoraproject.org/archives/list/devel@lists.fedoraproject.org/thread/G47SGOYIQLRDTWGOSLSWERZSSHXDEDH5/
The f35-python side tag has been merged to Rawhide. From now on, build as you would normally build. *** Bug 1968984 has been marked as a duplicate of this bug. *** |
python-fsspec fails to build with Python 3.10.0b1: =================================== FAILURES =================================== __________________________ test_compressions[lz4-rt] ___________________________ fmt = 'lz4', mode = 'rt' tmpdir = '/tmp/pytest-of-mockbuild/pytest-0/test_compressions_lz4_rt_0' @pytest.mark.parametrize("mode", ["rt", "rb"]) @pytest.mark.parametrize("fmt", list(compression.compr)) def test_compressions(fmt, mode, tmpdir): if fmt == "zip" and sys.version_info < (3, 6): pytest.xfail("zip compression requires python3.6 or higher") tmpdir = str(tmpdir) fn = os.path.join(tmpdir, ".tmp.getsize") fs = LocalFileSystem() f = OpenFile(fs, fn, compression=fmt, mode="wb") data = b"Long line of readily compressible text" with f as fo: fo.write(data) if fmt is None: assert fs.size(fn) == len(data) else: assert fs.size(fn) != len(data) f = OpenFile(fs, fn, compression=fmt, mode=mode) with f as fo: if mode == "rb": assert fo.read() == data else: > assert fo.read() == data.decode() fsspec/implementations/tests/test_local.py:184: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib64/python3.10/site-packages/lz4/frame/__init__.py:635: in read return self._buffer.read(size) /usr/lib64/python3.10/_compression.py:118: in readall while data := self.read(sys.maxsize): /usr/lib64/python3.10/_compression.py:103: in read data = self._decompressor.decompress(rawblock, size) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <lz4.frame.LZ4FrameDecompressor object at 0x7f61d8b00550> data = b'\x04"M\x18@@\xc0&\x00\x00\x80Long line of readily compressible text\x00\x00\x00\x00' max_length = 9223372036854775807 def decompress(self, data, max_length=-1): # noqa: F811 """Decompresses part or all of an LZ4 frame of compressed data. The returned data should be concatenated with the output of any previous calls to `decompress()`. If ``max_length`` is non-negative, returns at most ``max_length`` bytes of decompressed data. If this limit is reached and further output can be produced, the `needs_input` attribute will be set to ``False``. In this case, the next call to `decompress()` may provide data as ``b''`` to obtain more of the output. In all cases, any unconsumed data from previous calls will be prepended to the input data. If all of the input ``data`` was decompressed and returned (either because this was less than ``max_length`` bytes, or because ``max_length`` was negative), the `needs_input` attribute will be set to ``True``. If an end of frame marker is encountered in the data during decompression, decompression will stop at the end of the frame, and any data after the end of frame is available from the `unused_data` attribute. In this case, the `LZ4FrameDecompressor` instance is reset and can be used for further decompression. Args: data (str, bytes or buffer-compatible object): compressed data to decompress Keyword Args: max_length (int): If this is non-negative, this method returns at most ``max_length`` bytes of decompressed data. Returns: bytes: Uncompressed data """ if self._unconsumed_data: data = self._unconsumed_data + data > decompressed, bytes_read, eoframe = decompress_chunk( self._context, data, max_length=max_length, return_bytearray=self._return_bytearray, ) E MemoryError /usr/lib64/python3.10/site-packages/lz4/frame/__init__.py:394: MemoryError __________________________ test_compressions[lz4-rb] ___________________________ fmt = 'lz4', mode = 'rb' tmpdir = '/tmp/pytest-of-mockbuild/pytest-0/test_compressions_lz4_rb_0' @pytest.mark.parametrize("mode", ["rt", "rb"]) @pytest.mark.parametrize("fmt", list(compression.compr)) def test_compressions(fmt, mode, tmpdir): if fmt == "zip" and sys.version_info < (3, 6): pytest.xfail("zip compression requires python3.6 or higher") tmpdir = str(tmpdir) fn = os.path.join(tmpdir, ".tmp.getsize") fs = LocalFileSystem() f = OpenFile(fs, fn, compression=fmt, mode="wb") data = b"Long line of readily compressible text" with f as fo: fo.write(data) if fmt is None: assert fs.size(fn) == len(data) else: assert fs.size(fn) != len(data) f = OpenFile(fs, fn, compression=fmt, mode=mode) with f as fo: if mode == "rb": > assert fo.read() == data fsspec/implementations/tests/test_local.py:182: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib64/python3.10/site-packages/lz4/frame/__init__.py:635: in read return self._buffer.read(size) /usr/lib64/python3.10/_compression.py:118: in readall while data := self.read(sys.maxsize): /usr/lib64/python3.10/_compression.py:103: in read data = self._decompressor.decompress(rawblock, size) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <lz4.frame.LZ4FrameDecompressor object at 0x7f61d8b7be20> data = b'\x04"M\x18@@\xc0&\x00\x00\x80Long line of readily compressible text\x00\x00\x00\x00' max_length = 9223372036854775807 def decompress(self, data, max_length=-1): # noqa: F811 """Decompresses part or all of an LZ4 frame of compressed data. The returned data should be concatenated with the output of any previous calls to `decompress()`. If ``max_length`` is non-negative, returns at most ``max_length`` bytes of decompressed data. If this limit is reached and further output can be produced, the `needs_input` attribute will be set to ``False``. In this case, the next call to `decompress()` may provide data as ``b''`` to obtain more of the output. In all cases, any unconsumed data from previous calls will be prepended to the input data. If all of the input ``data`` was decompressed and returned (either because this was less than ``max_length`` bytes, or because ``max_length`` was negative), the `needs_input` attribute will be set to ``True``. If an end of frame marker is encountered in the data during decompression, decompression will stop at the end of the frame, and any data after the end of frame is available from the `unused_data` attribute. In this case, the `LZ4FrameDecompressor` instance is reset and can be used for further decompression. Args: data (str, bytes or buffer-compatible object): compressed data to decompress Keyword Args: max_length (int): If this is non-negative, this method returns at most ``max_length`` bytes of decompressed data. Returns: bytes: Uncompressed data """ if self._unconsumed_data: data = self._unconsumed_data + data > decompressed, bytes_read, eoframe = decompress_chunk( self._context, data, max_length=max_length, return_bytearray=self._return_bytearray, ) E MemoryError /usr/lib64/python3.10/site-packages/lz4/frame/__init__.py:394: MemoryError _____________________________ test_lz4_compression _____________________________ tmpdir = local('/tmp/pytest-of-mockbuild/pytest-0/test_lz4_compression0') def test_lz4_compression(tmpdir): """Infer lz4 compression for .lz4 files if lz4 is available.""" tmp_path = pathlib.Path(str(tmpdir)) lz4 = pytest.importorskip("lz4") tmp_path.mkdir(exist_ok=True) tdat = "foobar" * 100 with fsspec.core.open( str(tmp_path / "out.lz4"), mode="wt", compression="infer" ) as outfile: outfile.write(tdat) compressed = (tmp_path / "out.lz4").open("rb").read() assert lz4.frame.decompress(compressed).decode() == tdat with fsspec.core.open( str(tmp_path / "out.lz4"), mode="rt", compression="infer" ) as infile: > assert infile.read() == tdat fsspec/tests/test_compression.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib64/python3.10/site-packages/lz4/frame/__init__.py:635: in read return self._buffer.read(size) /usr/lib64/python3.10/_compression.py:118: in readall while data := self.read(sys.maxsize): /usr/lib64/python3.10/_compression.py:103: in read data = self._decompressor.decompress(rawblock, size) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <lz4.frame.LZ4FrameDecompressor object at 0x7f61d8b7aef0> data = b'\x04"M\x18@@\xc0\x12\x00\x00\x00ofoobar\x06\x00\xff\xff<Poobar\x00\x00\x00\x00' max_length = 9223372036854775807 def decompress(self, data, max_length=-1): # noqa: F811 """Decompresses part or all of an LZ4 frame of compressed data. The returned data should be concatenated with the output of any previous calls to `decompress()`. If ``max_length`` is non-negative, returns at most ``max_length`` bytes of decompressed data. If this limit is reached and further output can be produced, the `needs_input` attribute will be set to ``False``. In this case, the next call to `decompress()` may provide data as ``b''`` to obtain more of the output. In all cases, any unconsumed data from previous calls will be prepended to the input data. If all of the input ``data`` was decompressed and returned (either because this was less than ``max_length`` bytes, or because ``max_length`` was negative), the `needs_input` attribute will be set to ``True``. If an end of frame marker is encountered in the data during decompression, decompression will stop at the end of the frame, and any data after the end of frame is available from the `unused_data` attribute. In this case, the `LZ4FrameDecompressor` instance is reset and can be used for further decompression. Args: data (str, bytes or buffer-compatible object): compressed data to decompress Keyword Args: max_length (int): If this is non-negative, this method returns at most ``max_length`` bytes of decompressed data. Returns: bytes: Uncompressed data """ if self._unconsumed_data: data = self._unconsumed_data + data > decompressed, bytes_read, eoframe = decompress_chunk( self._context, data, max_length=max_length, return_bytearray=self._return_bytearray, ) E MemoryError /usr/lib64/python3.10/site-packages/lz4/frame/__init__.py:394: MemoryError For the build logs, see: https://copr-be.cloud.fedoraproject.org/results/@python/python3.10/fedora-rawhide-x86_64/02174947-python-fsspec/ For all our attempts to build python-fsspec with Python 3.10, see: https://copr.fedorainfracloud.org/coprs/g/python/python3.10/package/python-fsspec/ Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.10: https://copr.fedorainfracloud.org/coprs/g/python/python3.10/ Let us know here if you have any questions. Python 3.10 will be included in Fedora 35. To make that update smoother, we're building Fedora packages with early pre-releases of Python 3.10. A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon. We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.