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Bug 564749
| Summary: | FTBFS python-biopython-1.53-1.fc13 | ||||||||||||||||
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| Product: | [Fedora] Fedora | Reporter: | FTBFS <ftbfs> | ||||||||||||||
| Component: | python-biopython | Assignee: | Alex Lancaster <alex> | ||||||||||||||
| Status: | CLOSED NOTABUG | QA Contact: | Fedora Extras Quality Assurance <extras-qa> | ||||||||||||||
| Severity: | high | Docs Contact: | |||||||||||||||
| Priority: | high | ||||||||||||||||
| Version: | rawhide | CC: | alex, matt_domsch | ||||||||||||||
| Target Milestone: | --- | Keywords: | Triaged | ||||||||||||||
| Target Release: | --- | ||||||||||||||||
| Hardware: | All | ||||||||||||||||
| OS: | Linux | ||||||||||||||||
| URL: | http://linux.dell.com/files/fedora/FixBuildRequires/mock-results/ | ||||||||||||||||
| Whiteboard: | |||||||||||||||||
| Fixed In Version: | Doc Type: | Bug Fix | |||||||||||||||
| Doc Text: | Story Points: | --- | |||||||||||||||
| Clone Of: | Environment: | ||||||||||||||||
| Last Closed: | 2010-02-20 08:53:23 UTC | Type: | --- | ||||||||||||||
| Regression: | --- | Mount Type: | --- | ||||||||||||||
| Documentation: | --- | CRM: | |||||||||||||||
| Verified Versions: | Category: | --- | |||||||||||||||
| oVirt Team: | --- | RHEL 7.3 requirements from Atomic Host: | |||||||||||||||
| Cloudforms Team: | --- | Target Upstream Version: | |||||||||||||||
| Embargoed: | |||||||||||||||||
| Bug Depends On: | |||||||||||||||||
| Bug Blocks: | 538681 | ||||||||||||||||
| Attachments: |
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Description
FTBFS
2010-02-13 16:48:02 UTC
Created attachment 391511 [details]
root.log
root.log for i386
Created attachment 391512 [details]
build.log
build.log for i386
Created attachment 391513 [details]
mock.log
mock.log for i386
Created attachment 391514 [details]
root.log
root.log for x86_64
Created attachment 391515 [details]
build.log
build.log for x86_64
Created attachment 391516 [details]
mock.log
mock.log for x86_64
OK so this seemed to successfully rebuild in devel / rawhide: http://koji.fedoraproject.org/koji/taskinfo?taskID=2001100 as well as the "branched" rawhide: http://koji.fedoraproject.org/koji/taskinfo?taskID=2001123 so I'm closing this as NOTABUG as it's a "bogus" false positive for FTBFS. This was the failure: Numerical Python (NumPy) is not installed. This package is required for many Biopython features. Please install it before you install Biopython. You can install Biopython anyway, but anything dependent on NumPy will not work. If you do this, and later install NumPy, you should then re-install Biopython. You can find NumPy at http://numpy.scipy.org error: Bad exit status from /var/tmp/rpm-tmp.nYhIuY (%build) RPM build errors: Now, it may be that something about NumPy was the actual problem, and that by fixing it, also resolves this bug. But it failed for me _4 times_, in the same way, so it is not a trivial false positive... numpy is pulled in by the BuildRequires and the build koji (on rawhide) seemed to find it and use it correctly. Hence I closed the bug. In your FTBFS test numpy is also pulled in correctly, from mock.log on x86_64: DEBUG util.py:256: Installing : numpy-1.4.0-2.fc13.x86_64 23/23 but for some reason the Python couldn't see it in your build. Odd. In any case it works on koji. I guess the version is different in my newer build: numpy-1.4.0-4.fc13.x86_64 vs your 1.4.0-2.fc13 version, so, yes something might have changed, although I'm not sure what would cause it not to be detected by biopython. |