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Bug 925551

Summary:	hmmer: Does not support aarch64 in f19 and rawhide
Product:	[Fedora] Fedora	Reporter:	Dennis Gilmore <dennis>
Component:	hmmer	Assignee:	Christian Iseli <Christian.Iseli>
Status:	CLOSED RAWHIDE	QA Contact:	Fedora Extras Quality Assurance <extras-qa>
Severity:	unspecified	Docs Contact:
Priority:	unspecified
Version:	rawhide	CC:	Christian.Iseli, pbrobinson
Target Milestone:	---
Target Release:	---
Hardware:	Unspecified
OS:	Unspecified
Whiteboard:
Fixed In Version:		Doc Type:	Bug Fix
Doc Text:		Story Points:	---
Clone Of:		Environment:
Last Closed:	2014-06-22 19:14:20 UTC	Type:	---
Regression:	---	Mount Type:	---
Documentation:	---	CRM:
Verified Versions:		Category:	---
oVirt Team:	---	RHEL 7.3 requirements from Atomic Host:
Cloudforms Team:	---	Target Upstream Version:
Embargoed:
Bug Depends On:
Bug Blocks:	922257

Description Dennis Gilmore 2013-03-23 00:44:50 UTC

Support for the ARM 64 bit CPU architecture (aarch64) was introduced in 
autoconf 2.69.  hmmer appears to use an earlier version of 
autoconf, preventing its being built.  This can be fixed in of three ways (In order of preference):

1. Work with upstream to migrate the package to autoconf 2.69.

2. Rerun autoconf or autoreconf in %prep or %build prior to running 
configure.

3. Apply the patch at http://ausil.fedorapeople.org/aarch64/hmmer/hmmer-aarch64.patch
which updates config.guess and config.sub to recognize aarch64.

Comment 1 Christian Iseli 2013-03-25 11:17:36 UTC

Hi,

(In reply to comment #0)
> 1. Work with upstream to migrate the package to autoconf 2.69.
> 
> 2. Rerun autoconf or autoreconf in %prep or %build prior to running 
> configure.
> 
> 3. Apply the patch at
> http://ausil.fedorapeople.org/aarch64/hmmer/hmmer-aarch64.patch
> which updates config.guess and config.sub to recognize aarch64.

I went with option 2 and pushed a change in rawhide git.  Can you please test if it fixes the build failure you observed on aarch64 ?

I just attempted a scratch build for arch aarch64, but it fails by saying that there is no such arch available:

alpha_chris: fedpkg scratch-build --arches aarch64
Building hmmer-3.0-7.fc20 for rawhide
Created task: 5168086
Task info: http://koji.fedoraproject.org/koji/taskinfo?taskID=5168086
Watching tasks (this may be safely interrupted)...
5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): free
5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): free -> open (buildvm-25.phx2.fedoraproject.org)
  5168087 buildSRPMFromSCM (/hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): open (buildvm-09.phx2.fedoraproject.org)
  5168087 buildSRPMFromSCM (/hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): open (buildvm-09.phx2.fedoraproject.org) -> closed
  0 free  1 open  1 done  0 failed
5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): open (buildvm-25.phx2.fedoraproject.org) -> FAILED: BuildError: No matching arches were found
  0 free  0 open  1 done  1 failed

5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da) failed

Comment 2 Dennis Gilmore 2013-03-26 13:35:55 UTC

there is no aarch64 hardware, we are going through the initial bootstrap of the new arch using simulators.