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Bug 1290286 - hdf5 built with old openmpi
Summary: hdf5 built with old openmpi
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora EPEL
Classification: Fedora
Component: hdf5
Version: epel7
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Orion Poplawski
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2015-12-10 04:34 UTC by Dmitrij S. Kryzhevich
Modified: 2015-12-28 21:25 UTC (History)
2 users (show)

Fixed In Version: hdf5-1.8.12-7.el7
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2015-12-28 21:25:49 UTC
Type: Bug
Embargoed:

Attachments (Terms of Use)

Description Dmitrij S. Kryzhevich 2015-12-10 04:34:52 UTC 
Description of problem:
In openmpi from RHEL/Centos 7.2 there is no libmpi.so.1 library and only libmpi.so.12 is. hdf5-openmpi requires first one for now.

Version-Release number of selected component (if applicable):
hdf5-openmpi-1.8.12-6.el7.x86_64
openmpi-1.10.0-10.el7.x86_64


How reproducible:
Every time when try to link anything with hdf5-openmpi lib.


Actual results:
/usr/bin/ld: warning: libmpi.so.1, needed by /usr/lib64/openmpi/lib/libhdf5.so, not found (try using -rpath or -rpath-link)

Expected results:
Linking without error.
Comment 1 Orion Poplawski 2015-12-10 04:53:16 UTC 
For now, try installing compat-openmpi16-devel.  But I'm building an update.
Comment 2 Dmitrij S. Kryzhevich 2015-12-10 05:04:44 UTC 
I tried before reporting. Should mention that, I suppose.

What issue with compat-openmpi16: it require call for "module load mpi/compat-openmpi16-x86_64" which add PATH, LD_LIBRARY_PATH and so on in addition to already loaded mpi/openmpi-x86_64. So, when mpicc is called during build phase in koji I get... I don't know exactly what I get.

I think I better wait.
Comment 3 Fedora Update System 2015-12-10 15:51:01 UTC 
hdf5-1.8.12-7.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-2d0e7de56f
Comment 4 Fedora Update System 2015-12-28 19:06:01 UTC 
hdf5-1.8.12-7.el7 netcdf-4.3.3.1-5.el7 netcdf-fortran-4.2-16.el7 paraview-4.4.0-2.el7 has been submitted as an update to Fedora EPEL 7. https://bodhi.fedoraproject.org/updates/FEDORA-EPEL-2015-215b4baa77
Comment 5 Fedora Update System 2015-12-28 21:25:42 UTC 
hdf5-1.8.12-7.el7, netcdf-4.3.3.1-5.el7, netcdf-fortran-4.2-16.el7, paraview-4.4.0-2.el7 has been pushed to the Fedora EPEL 7 stable repository. If problems still persist, please make note of it in this bug report.
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