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Bug 1799906 - python-MDAnalysis: FTBFS in Fedora rawhide/f32
Summary: python-MDAnalysis: FTBFS in Fedora rawhide/f32
Alias: None
Product: Fedora
Classification: Fedora
Component: python-MDAnalysis
Version: 32
Hardware: Unspecified
OS: Unspecified
Target Milestone: ---
Assignee: Christoph Junghans
QA Contact: Fedora Extras Quality Assurance
Depends On:
Blocks: F32FTBFS
TreeView+ depends on / blocked
Reported: 2020-02-06 19:38 UTC by Fedora Release Engineering
Modified: 2020-02-15 03:00 UTC (History)
2 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Last Closed: 2020-02-15 03:00:24 UTC
Type: ---

Attachments (Terms of Use)
build.log (deleted)
2020-02-06 19:38 UTC, Fedora Release Engineering
no flags Details
root.log (deleted)
2020-02-06 19:38 UTC, Fedora Release Engineering
no flags Details
state.log (deleted)
2020-02-06 19:38 UTC, Fedora Release Engineering
no flags Details

Description Fedora Release Engineering 2020-02-06 19:38:15 UTC
python-MDAnalysis failed to build from source in Fedora rawhide/f32

For details on the mass rebuild see:
Please fix python-MDAnalysis at your earliest convenience and set the bug's status to
ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks,
python-MDAnalysis will be orphaned. Before branching of Fedora 33,
python-MDAnalysis will be retired, if it still fails to build.

For more details on the FTBFS policy, please visit:

Comment 1 Fedora Release Engineering 2020-02-06 19:38:17 UTC
Created attachment 1660397 [details]

Comment 2 Fedora Release Engineering 2020-02-06 19:38:19 UTC
Created attachment 1660398 [details]

file root.log too big, will only attach last 32768 bytes

Comment 3 Fedora Release Engineering 2020-02-06 19:38:20 UTC
Created attachment 1660400 [details]

Comment 4 Christoph Junghans 2020-02-06 20:30:20 UTC
Actually not an MDAnalysis problem:
DEBUG  ['/usr/bin/dnf', 'builddep', '--installroot', '/var/lib/mock/f32-build-19359248-1350018/root/', '--setopt=install_weak_deps=0', '--disableplugin=local', '--disableplugin=spa
cewalk', '/var/lib/mock/f32-build-19359248-1350018/root//builddir/build/SRPMS/python-MDAnalysis-0.20.1-2.fc32.src.rpm']
DEBUG  child environment: None
DEBUG  Executing command: ['/usr/bin/dnf', 'builddep', '--installroot', '/var/lib/mock/f32-build-19359248-1350018/root/', '--setopt=install_weak_deps=0', '--disableplugin=local', '--disableplugin=spacewalk', '/var/lib/mock/f32-build-19359248-1350018/root//builddir/build/SRPMS/python-MDAnalysis-0.20.1-2.fc32.src.rpm', '--setopt=tsflags=nocontexts'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/var/lib/mock/f32-build-19359248-1350018/rpmconfig', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'LC_MESSAGES': 'C.UTF-8', 'LD_PRELOAD': '/var/tmp/tmp.mock.v3ilqfhe/$LIB/'} and shell False
DEBUG  No matches found for the following disable plugin patterns: local, spacewalk
DEBUG  Last metadata expiration check: 0:00:01 ago on Sun Feb  2 02:15:39 2020.
DEBUG  Error:
DEBUG   Problem: package python3-biopython-1.76-1.fc32.x86_64 requires mysql-connector-python3, but none of the providers can be installed
DEBUG    - conflicting requests
DEBUG    - nothing provides python3.8dist(protobuf) = 3.6.1 needed by mysql-connector-python3-8.0.19-1.fc32.noarch
DEBUG  (try to add '--skip-broken' to skip uninstallable packages)
DEBUG  Child return code was: 1

Comment 5 Ben Cotton 2020-02-11 16:40:51 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 32 development cycle.
Changing version to 32.

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