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Bug 1837013 - python-geoplot fails to build with Python 3.9: ModuleNotFoundError: No module named 'threadpoolctl'
Summary: python-geoplot fails to build with Python 3.9: ModuleNotFoundError: No module...
Keywords:
Status: CLOSED DUPLICATE of bug 1841713
Alias: None
Product: Fedora
Classification: Fedora
Component: python-geoplot
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Elliott Sales de Andrade
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On: 1836744
Blocks: F33FTBFS PYTHON39 1841713 1841734
TreeView+ depends on / blocked
 
Reported: 2020-05-18 16:31 UTC by Miro Hrončok
Modified: 2020-06-26 09:51 UTC (History)
5 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2020-06-26 09:51:47 UTC
Type: Bug
Embargoed:

Attachments (Terms of Use)

Description Miro Hrončok 2020-05-18 16:31:42 UTC 
python-geoplot fails to build with Python 3.9.0a6.

==================================== ERRORS ====================================
____________________ ERROR collecting tests/mixin_tests.py _____________________
ImportError while importing test module '/builddir/build/BUILD/geoplot-0.4.1/tests/mixin_tests.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
tests/mixin_tests.py:1: in <module>
    from geoplot.geoplot import (Plot, HueMixin, ScaleMixin, ClipMixin, LegendMixin, webmap)
../../BUILDROOT/python-geoplot-0.4.1-1.fc33.x86_64/usr/lib/python3.9/site-packages/geoplot/__init__.py:1: in <module>
    from .geoplot import (
../../BUILDROOT/python-geoplot-0.4.1-1.fc33.x86_64/usr/lib/python3.9/site-packages/geoplot/geoplot.py:18: in <module>
    import mapclassify as mc
/usr/lib/python3.9/site-packages/mapclassify/__init__.py:4: in <module>
    from .classifiers import (
/usr/lib/python3.9/site-packages/mapclassify/classifiers.py:8: in <module>
    from sklearn.cluster import KMeans as KMEANS
/usr/lib64/python3.9/site-packages/sklearn/cluster/__init__.py:6: in <module>
    from ._spectral import spectral_clustering, SpectralClustering
/usr/lib64/python3.9/site-packages/sklearn/cluster/_spectral.py:18: in <module>
    from ._kmeans import k_means
/usr/lib64/python3.9/site-packages/sklearn/cluster/_kmeans.py:34: in <module>
    from ._k_means_lloyd import lloyd_iter_chunked_dense
sklearn/cluster/_k_means_lloyd.pyx:11: in init sklearn.cluster._k_means_lloyd
    ???
E   ModuleNotFoundError: No module named 'threadpoolctl'
_____________________ ERROR collecting tests/proj_tests.py _____________________
ImportError while importing test module '/builddir/build/BUILD/geoplot-0.4.1/tests/proj_tests.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
tests/proj_tests.py:6: in <module>
    import geoplot as gplt
../../BUILDROOT/python-geoplot-0.4.1-1.fc33.x86_64/usr/lib/python3.9/site-packages/geoplot/__init__.py:1: in <module>
    from .geoplot import (
../../BUILDROOT/python-geoplot-0.4.1-1.fc33.x86_64/usr/lib/python3.9/site-packages/geoplot/geoplot.py:18: in <module>
    import mapclassify as mc
/usr/lib/python3.9/site-packages/mapclassify/__init__.py:4: in <module>
    from .classifiers import (
/usr/lib/python3.9/site-packages/mapclassify/classifiers.py:8: in <module>
    from sklearn.cluster import KMeans as KMEANS
/usr/lib64/python3.9/site-packages/sklearn/cluster/__init__.py:6: in <module>
    from ._spectral import spectral_clustering, SpectralClustering
/usr/lib64/python3.9/site-packages/sklearn/cluster/_spectral.py:18: in <module>
    from ._kmeans import k_means
/usr/lib64/python3.9/site-packages/sklearn/cluster/_kmeans.py:34: in <module>
    from ._k_means_lloyd import lloyd_iter_chunked_dense
sklearn/cluster/_k_means_lloyd.pyx:11: in init sklearn.cluster._k_means_lloyd
    ???
E   ModuleNotFoundError: No module named 'threadpoolctl'
_____________________ ERROR collecting tests/viz_tests.py ______________________
ImportError while importing test module '/builddir/build/BUILD/geoplot-0.4.1/tests/viz_tests.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
tests/viz_tests.py:9: in <module>
    from geoplot import utils
../../BUILDROOT/python-geoplot-0.4.1-1.fc33.x86_64/usr/lib/python3.9/site-packages/geoplot/__init__.py:1: in <module>
    from .geoplot import (
../../BUILDROOT/python-geoplot-0.4.1-1.fc33.x86_64/usr/lib/python3.9/site-packages/geoplot/geoplot.py:18: in <module>
    import mapclassify as mc
/usr/lib/python3.9/site-packages/mapclassify/__init__.py:4: in <module>
    from .classifiers import (
/usr/lib/python3.9/site-packages/mapclassify/classifiers.py:8: in <module>
    from sklearn.cluster import KMeans as KMEANS
/usr/lib64/python3.9/site-packages/sklearn/cluster/__init__.py:6: in <module>
    from ._spectral import spectral_clustering, SpectralClustering
/usr/lib64/python3.9/site-packages/sklearn/cluster/_spectral.py:18: in <module>
    from ._kmeans import k_means
/usr/lib64/python3.9/site-packages/sklearn/cluster/_kmeans.py:34: in <module>
    from ._k_means_lloyd import lloyd_iter_chunked_dense
sklearn/cluster/_k_means_lloyd.pyx:11: in init sklearn.cluster._k_means_lloyd
    ???
E   ModuleNotFoundError: No module named 'threadpoolctl'
!!!!!!!!!!!!!!!!!!! Interrupted: 3 errors during collection !!!!!!!!!!!!!!!!!!!!
=========================== 3 error in 1.88 seconds ============================

For the build logs, see:
https://copr-be.cloud.fedoraproject.org/results/@python/python3.9/fedora-rawhide-x86_64/01390581-python-geoplot/

For all our attempts to build python-geoplot with Python 3.9, see:
https://copr.fedorainfracloud.org/coprs/g/python/python3.9/package/python-geoplot/

Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.9:
https://copr.fedorainfracloud.org/coprs/g/python/python3.9/

Let us know here if you have any questions.

Python 3.9 will be included in Fedora 33. To make that update smoother, we're building Fedora packages with early pre-releases of Python 3.9.
A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon.
We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.
Comment 1 Elliott Sales de Andrade 2020-05-18 20:10:04 UTC 
This is a bug in scikit-learn, not geoplot.
Comment 2 Miro Hrončok 2020-05-25 13:01:09 UTC 
This comment is mass posted to all bugs blocking the Python 3.9 tracker, sorry if it is not 100 % relevant. When in doubt, please ask.


The Python 3.9 rebuild is in progress in a Koji side tag.

If you fix this bug, please don't rebuild the package in regular rawhide, but do it in the side tag with:

    $ fedpkg build --target=f33-python

The rebuild is progressing slowly and it is possible this package won't have all the required build dependencies yet. If that's the case, please just leave the fix committed and pushed and we will eventually rebuild it for you.

You are not asked to go and try rebuild all the missing dependencies yourself. If you know there is a bootstrap loop in the dependencies, let me know and we can untangle it together.

If you want to test your fix or reproduce the failure, you can still use the Copr repo mentioned in the initial comment of this bug: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/
Comment 3 Miro Hrončok 2020-05-29 07:11:16 UTC 
Python 3.9 update: The f33-python side tag is currently being merged.

New builds in f33-python are no longer possible, but python3 is not yet updated to Python 3.9 in rawhide. You can check when Python is Python 3.9 with:

    $ koji wait-repo f33-build --build python3.9-3.9.0~b1-3.fc3

And build the packages normally after that.
Comment 4 Miro Hrončok 2020-06-26 09:51:47 UTC 

*** This bug has been marked as a duplicate of bug 1841713 ***
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