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Bug 1838465 - python-fiona fails to build due to missing dependencies
Summary: python-fiona fails to build due to missing dependencies
Keywords:
Status: CLOSED DUPLICATE of bug 1841702
Alias: None
Product: Fedora
Classification: Fedora
Component: python-fiona
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Elliott Sales de Andrade
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On: 1841335
Blocks: F33FTBFS F33FailsToInstall PYTHON39
TreeView+ depends on / blocked
 
Reported: 2020-05-21 08:30 UTC by Miro Hrončok
Modified: 2020-06-17 09:58 UTC (History)
8 users (show)

Fixed In Version: python-fiona-1.8.13-5.fc33
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2020-06-17 09:58:05 UTC
Type: Bug
Embargoed:


Attachments (Terms of Use)

Description Miro Hrončok 2020-05-21 08:30:06 UTC
python-fiona fails to build with Python 3.9.0b1.

_________________________ test_search_debian_gdal_data _________________________

mock_debian = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0')

    def test_search_debian_gdal_data(mock_debian):
        """Find GDAL data under Debian locations"""
        finder = GDALDataFinder()
>       assert finder.search_debian(str(mock_debian)) == str(mock_debian.join("share").join("gdal").join("{}.{}".format(gdal_version.major, gdal_version.minor)))
E       AssertionError: assert None == '/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal/3.1'
E        +  where None = <bound method GDALDataFinder.search_debian of <fiona._env.GDALDataFinder object at 0x7f475367e8e0>>('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0')
E        +    where <bound method GDALDataFinder.search_debian of <fiona._env.GDALDataFinder object at 0x7f475367e8e0>> = <fiona._env.GDALDataFinder object at 0x7f475367e8e0>.search_debian
E        +    and   '/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0' = str(local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0'))
E        +  and   '/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal/3.1' = str(local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal/3.1'))
E        +    where local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal/3.1') = <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal')>('3.1')
E        +      where <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal')> = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal').join
E        +        where local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share/gdal') = <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share')>('gdal')
E        +          where <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share')> = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share').join
E        +            where local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0/share') = <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0')>('share')
E        +              where <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0')> = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_debian_gdal_data0').join
E        +      and   '3.1' = <built-in method format of str object at 0x7f475458d770>(3, 1)
E        +        where <built-in method format of str object at 0x7f475458d770> = '{}.{}'.format
E        +        and   3 = GDALVersion(major=3, minor=1).major
E        +        and   1 = GDALVersion(major=3, minor=1).minor

tests/test__env.py:80: AssertionError
_________________________ test_search_gdal_data_debian _________________________

mock_debian = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0')

    def test_search_gdal_data_debian(mock_debian):
        """Find GDAL data under Debian locations"""
        finder = GDALDataFinder()
>       assert finder.search(str(mock_debian)) == str(mock_debian.join("share").join("gdal").join("{}.{}".format(gdal_version.major, gdal_version.minor)))
E       AssertionError: assert None == '/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal/3.1'
E        +  where None = <bound method GDALDataFinder.search of <fiona._env.GDALDataFinder object at 0x7f4753722b50>>('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0')
E        +    where <bound method GDALDataFinder.search of <fiona._env.GDALDataFinder object at 0x7f4753722b50>> = <fiona._env.GDALDataFinder object at 0x7f4753722b50>.search
E        +    and   '/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0' = str(local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0'))
E        +  and   '/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal/3.1' = str(local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal/3.1'))
E        +    where local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal/3.1') = <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal')>('3.1')
E        +      where <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal')> = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal').join
E        +        where local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share/gdal') = <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share')>('gdal')
E        +          where <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share')> = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share').join
E        +            where local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0/share') = <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0')>('share')
E        +              where <bound method LocalPath.join of local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0')> = local('/tmp/pytest-of-mockbuild/pytest-0/test_search_gdal_data_debian0').join
E        +      and   '3.1' = <built-in method format of str object at 0x7f475458d770>(3, 1)
E        +        where <built-in method format of str object at 0x7f475458d770> = '{}.{}'.format
E        +        and   3 = GDALVersion(major=3, minor=1).major
E        +        and   1 = GDALVersion(major=3, minor=1).minor

tests/test__env.py:96: AssertionError
______________________________ test_compound_crs _______________________________

data = local('/tmp/pytest-of-mockbuild/pytest-0/test_compound_crs0')

    def test_compound_crs(data):
        """Don't crash"""
        prj = data.join("coutwildrnp.prj")
        prj.write("""COMPD_CS["unknown",GEOGCS["WGS 84",DATUM["WGS_1984",SPHEROID["WGS 84",6378137,298.257223563,AUTHORITY["EPSG","7030"]],TOWGS84[0,0,0,0,0,0,0],AUTHORITY["EPSG","6326"]],PRIMEM["Greenwich",0],UNIT["degree",0.0174532925199433],AUTHORITY["EPSG","4326"]],VERT_CS["unknown",VERT_DATUM["unknown",2005],UNIT["metre",1.0,AUTHORITY["EPSG","9001"]],AXIS["Up",UP]]]""")
        with fiona.open(str(data.join("coutwildrnp.shp"))) as collection:
>           assert collection.crs == {}
E           AssertionError: assert {'ellps': 'WG...0,0,0,0', ...} == {}
E             Left contains 5 more items:
E             {'ellps': 'WGS84',
E              'no_defs': True,
E              'proj': 'longlat',
E              'towgs84': '0,0,0,0,0,0,0',
E              'vunits': 'm'}
E             Use -v to get the full diff

tests/test_compound_crs.py:11: AssertionError

For the build logs, see:
https://copr-be.cloud.fedoraproject.org/results/@python/python3.9/fedora-rawhide-x86_64/01396961-python-fiona/

For all our attempts to build python-fiona with Python 3.9, see:
https://copr.fedorainfracloud.org/coprs/g/python/python3.9/package/python-fiona/

Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.9:
https://copr.fedorainfracloud.org/coprs/g/python/python3.9/

Let us know here if you have any questions.

Python 3.9 will be included in Fedora 33. To make that update smoother, we're building Fedora packages with early pre-releases of Python 3.9.
A build failure prevents us from testing all dependent packages (transitive [Build]Requires), so if this package is required a lot, it's important for us to get it fixed soon.
We'd appreciate help from the people who know this package best, but if you don't want to work on this now, let us know so we can try to work around it on our side.

Comment 1 Miro Hrončok 2020-05-25 13:02:04 UTC
This comment is mass posted to all bugs blocking the Python 3.9 tracker, sorry if it is not 100 % relevant. When in doubt, please ask.


The Python 3.9 rebuild is in progress in a Koji side tag.

If you fix this bug, please don't rebuild the package in regular rawhide, but do it in the side tag with:

    $ fedpkg build --target=f33-python

The rebuild is progressing slowly and it is possible this package won't have all the required build dependencies yet. If that's the case, please just leave the fix committed and pushed and we will eventually rebuild it for you.

You are not asked to go and try rebuild all the missing dependencies yourself. If you know there is a bootstrap loop in the dependencies, let me know and we can untangle it together.

If you want to test your fix or reproduce the failure, you can still use the Copr repo mentioned in the initial comment of this bug: https://copr.fedorainfracloud.org/coprs/g/python/python3.9/

Comment 2 Miro Hrončok 2020-05-29 07:11:55 UTC
Python 3.9 update: The f33-python side tag is currently being merged.

New builds in f33-python are no longer possible, but python3 is not yet updated to Python 3.9 in rawhide. You can check when Python is Python 3.9 with:

    $ koji wait-repo f33-build --build python3.9-3.9.0~b1-3.fc3

And build the packages normally after that.

Comment 3 Tomáš Hrnčiar 2020-06-10 07:17:08 UTC
python-fiona fails to build due to missing dependencies

DEBUG util.py:600:  Error: 
DEBUG util.py:600:   Problem: cannot install both python3-3.9.0~b1-3.fc33.x86_64 and python3-3.8.3-1.fc33.x86_64
DEBUG util.py:600:    - package python3-shapely-1.7-2b1.fc32.x86_64 requires python(abi) = 3.8, but none of the providers can be installed
DEBUG util.py:600:    - package python3-Cython-0.29.17-4.fc33.x86_64 requires python(abi) = 3.9, but none of the providers can be installed
DEBUG util.py:600:    - conflicting requests

Comment 4 Miro Hrončok 2020-06-10 07:47:15 UTC
> package python3-Cython-0.29.17-4.fc33.x86_64 requires python(abi) = 3.9

That is fine. It is just reported as error, because we cannot have python(abi) = 3.8 and python(abi) = 3.9 at the same time.

Comment 5 Miro Hrončok 2020-06-17 09:58:05 UTC

*** This bug has been marked as a duplicate of bug 1841702 ***


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