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Bug 1884363 - rdkit: FTBFS: No targets specified and no makefile found
Summary: rdkit: FTBFS: No targets specified and no makefile found
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: rdkit
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Gianluca Sforna
QA Contact: Fedora Extras Quality Assurance
URL: https://koschei.fedoraproject.org/pac...
Whiteboard:
Depends On:
Blocks: F33FTBFS
TreeView+ depends on / blocked
 
Reported: 2020-10-01 19:51 UTC by Jitka Plesnikova
Modified: 2020-10-06 00:15 UTC (History)
1 user (show)

Fixed In Version: rdkit-2019.03.3-12.fc34 rdkit-2019.03.3-12.fc33
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2020-10-06 00:15:40 UTC
Type: Bug
Embargoed:


Attachments (Terms of Use)

Description Jitka Plesnikova 2020-10-01 19:51:55 UTC
Description of problem:
Package rdkit fails to build from source in Fedora rawhide and Fedora 33.

+ /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python39 -D CATCH_DIR:FILEPATH=/usr/include/catch2 .
[..]
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/x86_64-redhat-linux-gnu
+ make -j6
make: *** No targets specified and no makefile found.  Stop.
error: Bad exit status from /var/tmp/rpm-tmp.mA5VoA (%build)

That's probably triggered by <https://fedoraproject.org/wiki/Changes/CMake_to_do_out-of-source_builds>.

Comment 1 Fedora Update System 2020-10-02 04:29:43 UTC
FEDORA-2020-6d06ea7dc7 has been submitted as an update to Fedora 33. https://bodhi.fedoraproject.org/updates/FEDORA-2020-6d06ea7dc7

Comment 2 Fedora Update System 2020-10-02 22:16:17 UTC
FEDORA-2020-6d06ea7dc7 has been pushed to the Fedora 33 testing repository.
In short time you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2020-6d06ea7dc7`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-6d06ea7dc7

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 3 Fedora Update System 2020-10-06 00:15:40 UTC
FEDORA-2020-6d06ea7dc7 has been pushed to the Fedora 33 stable repository.
If problem still persists, please make note of it in this bug report.


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