Note: This is a public test instance of Red Hat Bugzilla. The data contained within is a snapshot of the live data so any changes you make will not be reflected in the production Bugzilla. Email is disabled so feel free to test any aspect of the site that you want. File any problems you find or give feedback at
Bug 1926594 - [FTBFS] rdkit: FTBFS on rawhide
Summary: [FTBFS] rdkit: FTBFS on rawhide
Alias: None
Product: Fedora
Classification: Fedora
Component: rdkit
Version: 34
Hardware: Unspecified
OS: Unspecified
Target Milestone: ---
Assignee: Gianluca Sforna
QA Contact: Fedora Extras Quality Assurance
Depends On:
Blocks: PYTHON3.10 1905584 1927163 1937698
TreeView+ depends on / blocked
Reported: 2021-02-09 07:26 UTC by Patrik Novotný
Modified: 2021-06-14 10:09 UTC (History)
5 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Last Closed: 2021-06-14 10:09:54 UTC
Type: Bug

Attachments (Terms of Use)

Description Patrik Novotný 2021-02-09 07:26:18 UTC
Scratch build from current dist-git failed:

Comment 1 Ben Cotton 2021-02-09 16:08:25 UTC
This bug appears to have been reported against 'rawhide' during the Fedora 34 development cycle.
Changing version to 34.

Comment 2 Jonathan Wakely 2021-04-01 10:44:34 UTC
Failing in f34 and rawhide with the same error:

/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/bfp_gist.c:36:10: fatal error: access/tuptoaster.h: No such file or directory
   36 | #include <access/tuptoaster.h>
      |          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/low_gist.c:36:10: fatal error: access/tuptoaster.h: No such file or directory
   36 | #include <access/tuptoaster.h>
      |          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.
/builddir/build/BUILD/rdkit-Release_2019_03_3/python3/Code/PgSQL/rdkit/rdkit_gist.c:35:10: fatal error: access/tuptoaster.h: No such file or directory
   35 | #include <access/tuptoaster.h>
      |          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.

Comment 3 Jonathan Wakely 2021-05-11 09:30:21 UTC
Still broken in rawhide.

Comment 4 Jakub Jelinek 2021-05-31 11:31:41 UTC
Gentle ping: this bug is blocking an important gcc update in rawhide/f34.

Comment 5 Miro Hrončok 2021-06-04 20:14:29 UTC
This is a mass-posted update. Sorry if it is not 100% accurate to this bugzilla.

The Python 3.10 rebuild is in progress in a Koji side tag. If you manage to fix the problem, please commit the fix in the rawhide branch, but don't build the package in regular rawhide.

You can either build the package in the side tag, with:

    $ fedpkg build --target=f35-python

Or you can the build and we will eventually build it for you.

Note that the rebuild is still in progress, so not all (build) dependencies of this package might be available right away.


See also

If you have general questions about the rebuild, please use this mailing list thread:

Comment 6 Miro Hrončok 2021-06-07 22:59:08 UTC
The f35-python side tag has been merged to Rawhide. From now on, build as you would normally build.

Comment 7 Miro Hrončok 2021-06-14 10:09:54 UTC
The package was retired.

Note You need to log in before you can comment on or make changes to this bug.