Note: This is a public test instance of Red Hat Bugzilla. The data contained within is a snapshot of the live data so any changes you make will not be reflected in the production Bugzilla. Email is disabled so feel free to test any aspect of the site that you want. File any problems you find or give feedback at bugzilla.redhat.com.
Bug 1988077 - python-xbout: FTBFS in Fedora rawhide/f36
Summary: python-xbout: FTBFS in Fedora rawhide/f36
Keywords:
Status: CLOSED RAWHIDE
Alias: None
Product: Fedora
Classification: Fedora
Component: python-xbout
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: david08741
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
: 1969173 (view as bug list)
Depends On: 1935629
Blocks: PYTHON3.10 1969173 F36FTBFS F36FailsToInstall
TreeView+ depends on / blocked
 
Reported: 2021-07-29 17:51 UTC by Fedora Release Engineering
Modified: 2021-08-26 09:08 UTC (History)
2 users (show)

Fixed In Version: python-xbout-0.2.5-1.fc36
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2021-08-26 09:08:24 UTC
Type: ---
Embargoed:

Attachments (Terms of Use)
build.log (deleted)
2021-07-29 17:51 UTC, Fedora Release Engineering 		no flags Details
root.log (deleted)
2021-07-29 17:51 UTC, Fedora Release Engineering 		no flags Details
state.log (deleted)
2021-07-29 17:52 UTC, Fedora Release Engineering 		no flags Details
View All

Description Fedora Release Engineering 2021-07-29 17:51:53 UTC 
python-xbout failed to build from source in Fedora rawhide/f35

https://koji.fedoraproject.org/koji/taskinfo?taskID=72732847


For details on the mass rebuild see:

https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
Please fix python-xbout at your earliest convenience and set the bug's status to
ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks,
python-xbout will be orphaned. Before branching of Fedora 36,
python-xbout will be retired, if it still fails to build.

For more details on the FTBFS policy, please visit:
https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/
Comment 1 Fedora Release Engineering 2021-07-29 17:51:56 UTC 
Created attachment 1809038 [details]
build.log
Comment 2 Fedora Release Engineering 2021-07-29 17:51:59 UTC 
Created attachment 1809039 [details]
root.log

file root.log too big, will only attach last 32768 bytes
Comment 3 Fedora Release Engineering 2021-07-29 17:52:00 UTC 
Created attachment 1809040 [details]
state.log
Comment 4 Miro Hrončok 2021-08-02 11:14:07 UTC 
The current failures:

...
>       xrt.assert_identical(actual, fake)
E       AssertionError: Left and right Dataset objects are not identical
E       
E       
E       Differing data variables:
E       L   T             (t, r, theta, zeta) float64 dask.array<chunksize=(6, 2, 4, 7), meta=np.ndarray>
E           direction_y: Standard
E           cell_location: CELL_CENTRE
E           metadata: {'BOUT_VERSION': 4.3, 'NXPE': 3, 'NYPE': 3, 'NZPE': 1, 'MXG': 0...
E           options: None
E           geometry: s-alpha
E           regions: {'core': <xbout.region.Region>\n\tname\tcore\n\txinner_ind\t0\n\...
E       R   T             (t, r, theta, zeta) float64 0.0 0.0 0.0 0.0 ... 8.0 8.0 8.0
E           metadata: {'BOUT_VERSION': 4.3, 'NXPE': 3, 'NYPE': 3, 'NZPE': 1, 'MXG': 0...
E           options: None
E           geometry: s-alpha
E           regions: {'core': <xbout.region.Region>\n\tname\tcore\n\txinner_ind\t0\n\...
E       L   n             (t, r, theta, zeta) float64 dask.array<chunksize=(6, 2, 4, 7), meta=np.ndarray>
E           direction_y: Standard
E           cell_location: CELL_CENTRE
E           metadata: {'BOUT_VERSION': 4.3, 'NXPE': 3, 'NYPE': 3, 'NZPE': 1, 'MXG': 0...
E           options: None
E           geometry: s-alpha
E           regions: {'core': <xbout.region.Region>\n\tname\tcore\n\txinner_ind\t0\n\...
E       R   n             (t, r, theta, zeta) float64 0.0 0.0 0.0 0.0 ... 8.0 8.0 8.0
E           metadata: {'BOUT_VERSION': 4.3, 'NXPE': 3, 'NYPE': 3, 'NZPE': 1, 'MXG': 0...
E           options: None
E           geometry: s-alpha
E           regions: {'core': <xbout.region.Region>\n\tname\tcore\n\txinner_ind\t0\n\...
...

=========================== short test summary info ============================
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned[7]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_dask
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned[7]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[CELL_XLOW]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[CELL_YLOW]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_to_field_aligned_staggered[CELL_ZLOW]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[CELL_XLOW]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[CELL_YLOW]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_from_field_aligned_staggered[CELL_ZLOW]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_core_change_n[3]
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_region_singlenull
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_sol
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points
FAILED xbout/tests/test_boutdataarray.py::TestBoutDataArrayMethods::test_interpolate_parallel_toroidal_points_list
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_get_field_aligned
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned[7]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_dask
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned[7]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_XLOW]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_YLOW]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_to_field_aligned_staggered[CELL_ZLOW]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_XLOW]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_YLOW]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_from_field_aligned_staggered[CELL_ZLOW]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel[vars_to_interpolate0-True-True-guards3]
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_all_variables_arg
FAILED xbout/tests/test_boutdataset.py::TestBoutDatasetMethods::test_interpolate_parallel_limiter
FAILED xbout/tests/test_load.py::TestOpen::test_single_file - AssertionError:...
FAILED xbout/tests/test_load.py::TestOpen::test_squashed_file - AssertionErro...
FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_x - AssertionEr...
FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_y - AssertionEr...
FAILED xbout/tests/test_load.py::TestOpen::test_combine_along_xy - AssertionE...
FAILED xbout/tests/test_load.py::TestOpen::test_toroidal - AssertionError: Le...
FAILED xbout/tests/test_load.py::TestOpen::test_salpha - AssertionError: Left...
Comment 5 Ben Cotton 2021-08-10 13:32:49 UTC 
This bug appears to have been reported against 'rawhide' during the Fedora 35 development cycle.
Changing version to 35.
Comment 6 Miro Hrončok 2021-08-23 11:50:52 UTC 
David, what is the status? Are you working on a fix? Or have you reported this upstream?
Comment 7 Miro Hrončok 2021-08-23 11:51:26 UTC 
*** Bug 1969173 has been marked as a duplicate of this bug. ***
Comment 8 david08741 2021-08-23 12:05:50 UTC 
Yes, I am working on this. I'll try updating python-boutdata (no clue why I didn't get a bug for that) and if it still fails ask upstream for help.

I will probably not make it in time for the beta freeze, I only noticed yesterday.
Comment 9 Miro Hrončok 2021-08-24 10:27:23 UTC 
Hello,

Please note that this comment was generated automatically. If you feel that this output has mistakes, please contact me via email (mhroncok).

All subpackages of a package against which this bug was filled are now installable or removed from Fedora 35.

Thanks for taking care of it!
Note You need to log in before you can comment on or make changes to this bug.