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Bug 2225803 - fftw-3.3.10-9.fc40 FTBFS: Fatal error in internal_Bcast: MPI_Bcast(buffer=0x2aa34e44c00, count=4, MPI_LONG, 0, MPI_COMM_WORLD) failed
Summary: fftw-3.3.10-9.fc40 FTBFS: Fatal error in internal_Bcast: MPI_Bcast(buffer=0x2...
Keywords:
Status: NEW
Alias: None
Product: Fedora
Classification: Fedora
Component: fftw
Version: 38
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Conrad Meyer
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: F38FTBFS F39FTBFS F40FTBFS
TreeView+ depends on / blocked
 
Reported: 2023-07-25 17:38 UTC by Fedora Release Engineering
Modified: 2024-01-05 20:11 UTC (History)
7 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed:
Type: ---
Embargoed:


Attachments (Terms of Use)
build.log (deleted)
2023-07-25 17:38 UTC, Fedora Release Engineering
no flags Details
root.log (deleted)
2023-07-25 17:38 UTC, Fedora Release Engineering
no flags Details
state.log (deleted)
2023-07-25 17:38 UTC, Fedora Release Engineering
no flags Details

Description Fedora Release Engineering 2023-07-25 17:38:22 UTC
fftw failed to build from source in Fedora rawhide/f39

https://koji.fedoraproject.org/koji/taskinfo?taskID=103574041


For details on the mass rebuild see:

https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
Please fix fftw at your earliest convenience and set the bug's status to
ASSIGNED when you start fixing it. If the bug remains in NEW state for 8 weeks,
fftw will be orphaned. Before branching of Fedora 40,
fftw will be retired, if it still fails to build.

For more details on the FTBFS policy, please visit:
https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/

Comment 1 Fedora Release Engineering 2023-07-25 17:38:29 UTC
Created attachment 1977882 [details]
build.log

file build.log too big, will only attach last 32768 bytes

Comment 2 Fedora Release Engineering 2023-07-25 17:38:33 UTC
Created attachment 1977883 [details]
root.log

file root.log too big, will only attach last 32768 bytes

Comment 3 Fedora Release Engineering 2023-07-25 17:38:35 UTC
Created attachment 1977884 [details]
state.log

Comment 4 Fedora Release Engineering 2023-08-16 07:56:09 UTC
This bug appears to have been reported against 'rawhide' during the Fedora Linux 39 development cycle.
Changing version to 39.

Comment 5 Petr Pisar 2023-11-29 12:57:52 UTC
The tests fails on s390x:

perl -w ../../tests/check.pl --verbose --random --maxsize=10000 -c=10  --mpi "mpirun -np 2 `pwd`/mpi-bench"
Executing "mpirun -np 2 /builddir/build/BUILD/fftw-3.3.10/mpich-single/mpi/mpi-bench --verbose=1   --verify 'ofc[12x10v7' --verify 'ifc[12x10v7' --verify 'obc5v6' --verify 'ibc5v6' --verify 'ofc5v6' --verify 'ifc5v6' --verify 'ok[2bx5bx5e11v11' --verify 'ik[2bx5bx5e11v11' --verify 'ofr]8x9x13x6' --verify 'ifr]8x9x13x6' --verify 'obc]8x9x13x6' --verify 'ibc]8x9x13x6' --verify 'ofc]8x9x13x6' --verify 'ifc]8x9x13x6' --verify 'obrd13x14' --verify 'ibrd13x14' --verify 'ofrd13x14' --verify 'ifrd13x14' --verify 'obcd13x14' --verify 'ibcd13x14' --verify 'ofcd13x14' --verify 'ifcd13x14' --verify 'ofrd]4x7x8x9' --verify 'ifrd]4x7x8x9' --verify 'obcd]4x7x8x9' --verify 'ibcd]4x7x8x9' --verify 'ofcd]4x7x8x9' --verify 'ifcd]4x7x8x9' --verify 'ok]2o01x11o11x2o00x6b' --verify 'ik]2o01x11o11x2o00x6b' --verify 'ofr]13x4v2' --verify 'ifr]13x4v2' --verify 'obc]13x4v2' --verify 'ibc]13x4v2' --verify 'ofc]13x4v2' --verify 'ifc]13x4v2' --verify 'ok[8e11x3o01x5e11x12o01v5' --verify 'ik[8e11x3o01x5e11x12o01v5' --verify 'obr[6x2x4x5v7' --verify 'ibr[6x2x4x5v7' --verify 'obc[6x2x4x5v7' --verify 'ibc[6x2x4x5v7' --verify 'ofc[6x2x4x5v7' --verify 'ifc[6x2x4x5v7'"
FAILED mpirun -np 2 /builddir/build/BUILD/fftw-3.3.10/mpich-single/mpi/mpi-bench:  --verify 'ofc[12x10v7' --verify 'ifc[12x10v7' --verify 'obc5v6' --verify 'ibc5v6' --verify 'ofc5v6' --verify 'ifc5v6' --verify 'ok[2bx5bx5e11v11' --verify 'ik[2bx5bx5e11v11' --verify 'ofr]8x9x13x6' --verify 'ifr]8x9x13x6' --verify 'obc]8x9x13x6' --verify 'ibc]8x9x13x6' --verify 'ofc]8x9x13x6' --verify 'ifc]8x9x13x6' --verify 'obrd13x14' --verify 'ibrd13x14' --verify 'ofrd13x14' --verify 'ifrd13x14' --verify 'obcd13x14' --verify 'ibcd13x14' --verify 'ofcd13x14' --verify 'ifcd13x14' --verify 'ofrd]4x7x8x9' --verify 'ifrd]4x7x8x9' --verify 'obcd]4x7x8x9' --verify 'ibcd]4x7x8x9' --verify 'ofcd]4x7x8x9' --verify 'ifcd]4x7x8x9' --verify 'ok]2o01x11o11x2o00x6b' --verify 'ik]2o01x11o11x2o00x6b' --verify 'ofr]13x4v2' --verify 'ifr]13x4v2' --verify 'obc]13x4v2' --verify 'ibc]13x4v2' --verify 'ofc]13x4v2' --verify 'ifc]13x4v2' --verify 'ok[8e11x3o01x5e11x12o01v5' --verify 'ik[8e11x3o01x5e11x12o01v5' --verify 'obr[6x2x4x5v7' --verify 'ibr[6x2x4x5v7' --verify 'obc[6x2x4x5v7' --verify 'ibc[6x2x4x5v7' --verify 'ofc[6x2x4x5v7' --verify 'ifc[6x2x4x5v7'
make[2]: Leaving directory '/builddir/build/BUILD/fftw-3.3.10/mpich-single/mpi'
Abort(609824271) on node 1 (rank 1 in comm 0): Fatal error in internal_Bcast: Other MPI error, error stack:
internal_Bcast(107)........................: MPI_Bcast(buffer=0x2aa34e44c00, count=4, MPI_LONG, 0, MPI_COMM_WORLD) failed
MPID_Bcast(272)............................: 
MPIDI_Bcast_allcomm_composition_json(225)..: 
MPIDI_POSIX_mpi_bcast(219).................: 
MPIDI_POSIX_mpi_bcast_release_gather(132)..: 
MPIDI_POSIX_mpi_release_gather_release(218): message sizes do not match across processes in the collective routine: Received 0 but expected 32
make[2]: *** [Makefile:997: check-local] Error 1
make[1]: *** [Makefile:786: check-am] Error 2
make: *** [Makefile:788: check] Error 2


It also fails differently on i686 in root.log:

DEBUG util.py:543:  Executing command: ['rpm', '-q', 'rpm', 'rpm-sequoia', 'python3-dnf', 'python3-dnf-plugins-core', 'yum', 'yum-utils', '--root', '/var/lib/mock/f40-build-47143190-5632318-bootstrap/root'] with env {'TERM': 'vt100', 'SHELL': '/bin/sh', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'LANG': 'C.UTF-8'} and shell False
DEBUG util.py:448:  rpm-4.19.0-2.fc40.i686
DEBUG util.py:448:  rpm-sequoia-1.5.0-1.fc40.i686
DEBUG util.py:448:  python3-dnf-4.18.1-2.fc40.noarch
DEBUG util.py:448:  python3-dnf-plugins-core-4.4.3-1.fc40.noarch
DEBUG util.py:448:  package yum is not installed
DEBUG util.py:448:  package yum-utils is not installed
DEBUG util.py:595:  Child return code was: 2
INFO package_manager.py:194:  Buildroot is handled by package management installed into bootstrap:
  rpm-4.19.0-2.fc40.i686
  rpm-sequoia-1.5.0-1.fc40.i686
  python3-dnf-4.18.1-2.fc40.noarch
  python3-dnf-plugins-core-4.4.3-1.fc40.noarch

Comment 6 Antonio T. sagitter 2024-01-05 20:11:24 UTC
Same error for MUMPS on Fedora 40 s390x:

+ mpirun -np 3 ./c_example
RPM build errors:
Abort(542715407) on node 1 (rank 1 in comm 0): Fatal error in internal_Bcast: Other MPI error, error stack:
internal_Bcast(107)........................: MPI_Bcast(buffer=0x3ffef174468, count=1, MPI_INTEGER, 1, comm=0x84000001) failed
MPID_Bcast(272)............................: 
MPIDI_Bcast_allcomm_composition_json(225)..: 
MPIDI_POSIX_mpi_bcast(219).................: 
MPIDI_POSIX_mpi_bcast_release_gather(132)..: 
MPIDI_POSIX_mpi_release_gather_release(218): message sizes do not match across processes in the collective routine: Received 0 but expected 4
Abort(609824271) on node 2 (rank 2 in comm 0): Fatal error in internal_Bcast: Other MPI error, error stack:
internal_Bcast(107)........................: MPI_Bcast(buffer=0x3ffc0af3cb8, count=1, MPI_INTEGER, 1, comm=0x84000001) failed
MPID_Bcast(272)............................: 
MPIDI_Bcast_allcomm_composition_json(225)..: 
MPIDI_POSIX_mpi_bcast(219).................: 
MPIDI_POSIX_mpi_bcast_release_gather(132)..: 
MPIDI_POSIX_mpi_release_gather_release(218): message sizes do not match across processes in the collective routine: Received 0 but expected 4
error: Bad exit status from /var/tmp/rpm-tmp.y9isLV (%check)
    Bad exit status from /var/tmp/rpm-tmp.y9isLV (%check)


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