Note: This is a public test instance of Red Hat Bugzilla. The data contained within is a snapshot of the live data so any changes you make will not be reflected in the production Bugzilla. Email is disabled so feel free to test any aspect of the site that you want. File any problems you find or give feedback at bugzilla.redhat.com.
Bug 925551 - hmmer: Does not support aarch64 in f19 and rawhide
Summary: hmmer: Does not support aarch64 in f19 and rawhide
Keywords:
Status: CLOSED RAWHIDE
Alias: None
Product: Fedora
Classification: Fedora
Component: hmmer
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Christian Iseli
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: ARM64, F-ExcludeArch-aarch64
TreeView+ depends on / blocked
 
Reported: 2013-03-23 00:44 UTC by Dennis Gilmore
Modified: 2014-06-22 19:14 UTC (History)
2 users (show)

Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2014-06-22 19:14:20 UTC
Type: ---
Embargoed:

Attachments (Terms of Use)

Description Dennis Gilmore 2013-03-23 00:44:50 UTC 
Support for the ARM 64 bit CPU architecture (aarch64) was introduced in 
autoconf 2.69.  hmmer appears to use an earlier version of 
autoconf, preventing its being built.  This can be fixed in of three ways (In order of preference):

1. Work with upstream to migrate the package to autoconf 2.69.

2. Rerun autoconf or autoreconf in %prep or %build prior to running 
configure.

3. Apply the patch at http://ausil.fedorapeople.org/aarch64/hmmer/hmmer-aarch64.patch
which updates config.guess and config.sub to recognize aarch64.
Comment 1 Christian Iseli 2013-03-25 11:17:36 UTC 
Hi,

(In reply to comment #0)
> 1. Work with upstream to migrate the package to autoconf 2.69.
> 
> 2. Rerun autoconf or autoreconf in %prep or %build prior to running 
> configure.
> 
> 3. Apply the patch at
> http://ausil.fedorapeople.org/aarch64/hmmer/hmmer-aarch64.patch
> which updates config.guess and config.sub to recognize aarch64.

I went with option 2 and pushed a change in rawhide git.  Can you please test if it fixes the build failure you observed on aarch64 ?

I just attempted a scratch build for arch aarch64, but it fails by saying that there is no such arch available:

alpha_chris: fedpkg scratch-build --arches aarch64
Building hmmer-3.0-7.fc20 for rawhide
Created task: 5168086
Task info: http://koji.fedoraproject.org/koji/taskinfo?taskID=5168086
Watching tasks (this may be safely interrupted)...
5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): free
5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): free -> open (buildvm-25.phx2.fedoraproject.org)
  5168087 buildSRPMFromSCM (/hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): open (buildvm-09.phx2.fedoraproject.org)
  5168087 buildSRPMFromSCM (/hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): open (buildvm-09.phx2.fedoraproject.org) -> closed
  0 free  1 open  1 done  0 failed
5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da): open (buildvm-25.phx2.fedoraproject.org) -> FAILED: BuildError: No matching arches were found
  0 free  0 open  1 done  1 failed

5168086 build (rawhide, /hmmer:0f9bdfd1e694b46ad5f6ab94d00c403c207bd1da) failed
Comment 2 Dennis Gilmore 2013-03-26 13:35:55 UTC 
there is no aarch64 hardware, we are going through the initial bootstrap of the new arch using simulators.
Note You need to log in before you can comment on or make changes to this bug.