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Bug 1884363

Summary: rdkit: FTBFS: No targets specified and no makefile found
Product: [Fedora] Fedora Reporter: Jitka Plesnikova <jplesnik>
Component: rdkitAssignee: Gianluca Sforna <giallu>
Status: CLOSED ERRATA QA Contact: Fedora Extras Quality Assurance <extras-qa>
Severity: unspecified Docs Contact:
Priority: unspecified    
Version: rawhideCC: giallu
Target Milestone: ---   
Target Release: ---   
Hardware: Unspecified   
OS: Unspecified   
URL: https://koschei.fedoraproject.org/package/rdkit
Whiteboard:
Fixed In Version: rdkit-2019.03.3-12.fc34 rdkit-2019.03.3-12.fc33 Doc Type: If docs needed, set a value
Doc Text:
Story Points: ---
Clone Of: Environment:
Last Closed: 2020-10-06 00:15:40 UTC Type: Bug
Regression: --- Mount Type: ---
Documentation: --- CRM:
Verified Versions: Category: ---
oVirt Team: --- RHEL 7.3 requirements from Atomic Host:
Cloudforms Team: --- Target Upstream Version:
Embargoed:
Bug Depends On:    
Bug Blocks: 1803234    

Description Jitka Plesnikova 2020-10-01 19:51:55 UTC 
Description of problem:
Package rdkit fails to build from source in Fedora rawhide and Fedora 33.

+ /usr/bin/cmake -S . -B x86_64-redhat-linux-gnu -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_BUILD_THREADSAFE_SSS:BOOL=ON -D RDK_BUILD_CAIRO_SUPPORT:BOOL=ON -D RDK_BUILD_DESCRIPTORS3D:BOOL=OFF -D RDK_BUILD_COORDGEN_SUPPORT:BOOL=OFF -D RDK_BUILD_MOLINTERCHANGE_SUPPORT:BOOL=OFF -D RDK_BUILD_PGSQL:BOOL=ON -D RDK_PGSQL_STATIC:BOOL=OFF -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_USE_FLEXBISON:BOOL=OFF -D RDK_TEST_MULTITHREADED:BOOL=ON -D PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -D RDK_BOOST_PYTHON3_NAME=python39 -D CATCH_DIR:FILEPATH=/usr/include/catch2 .
[..]
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2019_03_3/python3/x86_64-redhat-linux-gnu
+ make -j6
make: *** No targets specified and no makefile found.  Stop.
error: Bad exit status from /var/tmp/rpm-tmp.mA5VoA (%build)

That's probably triggered by <https://fedoraproject.org/wiki/Changes/CMake_to_do_out-of-source_builds>.
Comment 1 Fedora Update System 2020-10-02 04:29:43 UTC 
FEDORA-2020-6d06ea7dc7 has been submitted as an update to Fedora 33. https://bodhi.fedoraproject.org/updates/FEDORA-2020-6d06ea7dc7
Comment 2 Fedora Update System 2020-10-02 22:16:17 UTC 
FEDORA-2020-6d06ea7dc7 has been pushed to the Fedora 33 testing repository.
In short time you'll be able to install the update with the following command:
`sudo dnf upgrade --enablerepo=updates-testing --advisory=FEDORA-2020-6d06ea7dc7`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2020-6d06ea7dc7

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.
Comment 3 Fedora Update System 2020-10-06 00:15:40 UTC 
FEDORA-2020-6d06ea7dc7 has been pushed to the Fedora 33 stable repository.
If problem still persists, please make note of it in this bug report.