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Bug 1453099 - mongodb-3.4.3-1.fc27 FTBFS: tests fail
Summary: mongodb-3.4.3-1.fc27 FTBFS: tests fail
Keywords:
Status: CLOSED DUPLICATE of bug 1452813
Alias: None
Product: Fedora
Classification: Fedora
Component: mongodb
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Marek Skalický
QA Contact: Fedora Extras Quality Assurance
URL: https://apps.fedoraproject.org/kosche...
Whiteboard:
Depends On:
Blocks:
TreeView+ depends on / blocked
 
Reported: 2017-05-22 07:22 UTC by Petr Pisar
Modified: 2017-05-22 09:09 UTC (History)
11 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2017-05-22 09:09:41 UTC
Type: Bug
Embargoed:

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Links
System ID Private Priority Status Summary Last Updated
Red Hat Bugzilla 1452813 0 unspecified CLOSED Programs segfault when linked to libtcmalloc: Relink `<...>' with `/lib64/libtcmalloc.so.4' for IFUNC symbol `_ZdlPvm' 2022-05-16 11:32:56 UTC

Internal Links: 1452813

Description Petr Pisar 2017-05-22 07:22:13 UTC 
mongodb-3.4.3-1.fc27 fails to build in F27 because all tests fail:

[executor:cpp_unit_test] 2017-05-18T15:55:08.509+0000 Summary: 316 test(s) ran in 526.01 seconds (0 succeeded, 0 were skipped, 316 failed, 0 errored)
    The following tests failed (with exit code):
        build/opt/mongo/base/base_test (-11)
        build/opt/mongo/base/secure_allocator_test (-11)
        build/opt/mongo/base/system_error_test (-11)
[...]

A difference between working and failing build root is:

        gperftools-devel 	2.5-5.fc26 	> 	2.5.91-1.fc27
	libpcap-devel 	14:1.8.1-3.fc26 	> 	14:1.8.1-4.fc27
	libacl 	2.2.52-13.fc26 	> 	2.2.52-15.fc27
	gperftools-libs 	2.5-5.fc26 	> 	2.5.91-1.fc27
	libblkid 	2.29.1-2.fc26 	> 	2.30-0.1.fc27
	libmount 	2.29.1-2.fc26 	> 	2.30-0.1.fc27
	python2 	2.7.13-8.fc27 	> 	2.7.13-9.fc27
	libpcap 	14:1.8.1-3.fc26 	> 	14:1.8.1-4.fc27
	util-linux 	2.29.1-2.fc26 	> 	2.30-0.1.fc27
	python2-libs 	2.7.13-8.fc27 	> 	2.7.13-9.fc27
	perl-Unicode-Normalize 	1.25-366.fc26 	> 	1.25-367.fc27
	libuuid 	2.29.1-2.fc26 	> 	2.30-0.1.fc27
	libsmartcols 	2.29.1-2.fc26 	> 	2.30-0.1.fc27
	device-mapper-libs 	1.02.140-1.fc27 	> 	1.02.140-2.fc27
	libfdisk 	2.29.1-2.fc26 	> 	2.30-0.1.fc27
	coreutils 	8.27-8.fc27 	> 	8.27-9.fc27
	coreutils-common 	8.27-8.fc27 	> 	8.27-9.fc27
	p11-kit 	0.23.5-1.fc27 	> 	0.23.5-2.fc27
	kernel-headers 	4.12.0-0.rc0.git9.1.... 	> 	4.12.0-0.rc1.git1.1....
	p11-kit-trust 	0.23.5-1.fc27 	> 	0.23.5-2.fc27
	device-mapper 	1.02.140-1.fc27 	> 	1.02.140-2.fc27
	libusbx 		> 	1.0.21-2.fc26
	system-python 	3.6.1-6.fc27 	> 	3.6.1-7.fc27
	glib2 	2.52.2-1.fc27 	> 	2.52.2-2.fc27
	fedora-repos 	27-0.1 	> 	27-0.2
	libcurl 	7.54.0-4.fc27 	> 	7.54.0-5.fc27
	python3-libs 	3.6.1-6.fc27 	> 	3.6.1-7.fc27
	gnutls 	3.5.12-1.fc27 	> 	3.5.12-2.fc27
	fedora-release 	27-0.1 	> 	27-0.2
	curl 	7.54.0-4.fc27 	> 	7.54.0-5.fc27
	python3 	3.6.1-6.fc27 	> 	3.6.1-7.fc27
	gnupg2 	2.1.20-2.fc27 	> 	2.1.21-2.fc27
	acl 	2.2.52-13.fc26 	> 	2.2.52-15.fc27
	system-python-libs 	3.6.1-6.fc27 	> 	3.6.1-7.fc27
	fedora-repos-rawhide 	27-0.1 	> 	27-0.2

This happens on all platforms.
Comment 1 Petr Pisar 2017-05-22 07:25:19 UTC 
If "(-11)" means SIGSEGV, then this is the same bug I see when starting already built mongodb server in perl-MongoDB tests <https://apps.fedoraproject.org/koschei/build/2901232>:

+ mkdir test_db
+ mongod --fork --logpath /builddir/build/BUILD/MongoDB-v1.8.0/mongod.log --pidfilepath /builddir/build/BUILD/MongoDB-v1.8.0/mongod.pid --dbpath /builddir/build/BUILD/MongoDB-v1.8.0/test_db/ --smallfiles
mongod: Relink `/lib64/libsnappy.so.1' with `/lib64/libtcmalloc.so.4' for IFUNC symbol `_ZdlPvm'
/var/tmp/rpm-tmp.h8x2hY: line 33: 18506 Segmentation fault      (core dumped) mongod --fork --logpath $PWD/mongod.log --pidfilepath $PWD/mongod.pid --dbpath $PWD/test_db/ --smallfiles
Comment 2 Petr Pisar 2017-05-22 08:06:40 UTC 
Maybe it's a dynamic linker bug #1452813.
Comment 3 Richard W.M. Jones 2017-05-22 08:12:59 UTC 
(In reply to Petr Pisar from comment #2)
> Maybe it's a dynamic linker bug #1452813.

The error message looks suspiciously similar.  However the way to be
sure would be to set the environment variable

export LD_DEBUG=all

and check the last few lines of output.  (Compare with
https://bugzilla.redhat.com/show_bug.cgi?id=1452813#c2)
Comment 4 Petr Pisar 2017-05-22 08:30:50 UTC 
Having installed:

mongodb-server-3.4.3-1.fc27.x86_64
snappy-1.1.4-3.fc26.x86_64
gperftools-libs-2.5.91-1.fc27.x86_64
glibc-2.25.90-2.fc27.x86_64

$ LD_DEBUG=all mongod --fork --logpath /tmp/mongod.log --pidfilepath /tmp/mongod.pid --dbpath /tmp --smallfiles
[...]
     18936:     symbol=_ZdlPvm;  lookup in file=mongod [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libpcre.so.1 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libpcrecpp.so.0 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libyaml-cpp.so.0.5 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libstemmer.so.0 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libz.so.1 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libicudata.so.57 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libicui18n.so.57 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libicuuc.so.57 [0]
     18936:     symbol=_ZdlPvm;  lookup in file=/lib64/libtcmalloc.so.4 [0]
     18936:     binding file /lib64/libsnappy.so.1 [0] to /lib64/libtcmalloc.so.4 [0]: normal symbol `_ZdlPvm' [CXXABI_1.3.9]
mongod: Relink `/lib64/libsnappy.so.1' with `/lib64/libtcmalloc.so.4' for IFUNC symbol `_ZdlPvm'
Segmentation fault (core dumped)
Comment 5 Florian Weimer 2017-05-22 08:53:49 UTC 
Probably a regression of bug 1312462.
Comment 6 Petr Pisar 2017-05-22 09:02:34 UTC 
The back trace point to ld-linux.so:

#0  0x0000000000000000 in ?? ()
#1  0x00007f8301842760 in ?? ()
#2  0x00007fffffffe370 in ?? ()
#3  0x00007f8301843f05 in ?? ()
#4  0x0000000000000001 in ?? ()
#5  0x00007f8304a2b14a in elf_machine_rela (skip_ifunc=<optimized out>, reloc_addr_arg=0x7f8300847f00, version=<optimized out>, sym=<optimized out>, reloc=0x7f8300642ff8,
    map=0x7f8304c2e920) at ../sysdeps/x86_64/dl-machine.h:349
#6  elf_dynamic_do_Rela (skip_ifunc=<optimized out>, lazy=<optimized out>, nrelative=<optimized out>, relsize=<optimized out>, reladdr=<optimized out>, map=0x7f8304c2e920)
    at do-rel.h:137
#7  _dl_relocate_object (scope=<optimized out>, reloc_mode=<optimized out>, consider_profiling=<optimized out>, consider_profiling@entry=0) at dl-reloc.c:259
#8  0x00007f8304a21e1a in dl_main (phdr=<optimized out>, phnum=<optimized out>, user_entry=<optimized out>, auxv=<optimized out>) at rtld.c:2047
#9  0x00007f8304a3843b in _dl_sysdep_start (start_argptr=start_argptr@entry=0x7fffffffe590, dl_main=dl_main@entry=0x7f8304a1fbc0 <dl_main>) at ../elf/dl-sysdep.c:253
#10 0x00007f8304a23078 in _dl_start_final (arg=0x7fffffffe590) at rtld.c:303
#11 _dl_start (arg=0x7fffffffe590) at rtld.c:409
#12 0x00007f8304a1ee68 in _start () from /lib64/ld-linux-x86-64.so.2
#13 0x0000000000000009 in ?? ()
[...]
Comment 7 Richard W.M. Jones 2017-05-22 09:08:44 UTC 
That's very similar to:
https://bugzilla.redhat.com/show_bug.cgi?id=1452813#c1

Suggest marking this bug as a duplicate and reassigning the
other bug to gperftools.  I'm still seeing if a simple rebuild
of the affected packages fixes things or not.
Comment 8 Richard W.M. Jones 2017-05-22 09:09:41 UTC 
In fact, let's just do that ...

*** This bug has been marked as a duplicate of bug 1452813 ***
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