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Bug 1721934 - libsbml fails to build with Python 3.8
Summary: libsbml fails to build with Python 3.8
Keywords:
Status: CLOSED RAWHIDE
Alias: None
Product: Fedora
Classification: Fedora
Component: libsbml
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
high
Target Milestone: ---
Assignee: Zbigniew Jędrzejewski-Szmek
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: PYTHON38
TreeView+ depends on / blocked
 
Reported: 2019-06-19 09:25 UTC by Miro Hrončok
Modified: 2019-07-12 13:23 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2019-07-12 13:23:05 UTC
Type: Bug
Embargoed:

Attachments (Terms of Use)

Description Miro Hrončok 2019-06-19 09:25:22 UTC 
libsbml fails to build with Python 3.8.0b1.

[ 98%] Swig C# source
cd /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.18.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="--define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RESwig: C# Bindings
Creating /builddir/build/BUILD/libSBML-5.18.0-Source/build/src/bindings/csharp/csharp-files
Creating: libsbmlcsP.dll
csharp-files/ListOfLocalRenderInformation.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalRenderInformation.cs(16,40): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/ListOfLocalRenderInformation.cs(22,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalRenderInformation.cs(27,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalStyles.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalStyles.cs(16,29): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/ListOfLocalStyles.cs(22,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/ListOfLocalStyles.cs(27,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/StringSet.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/StringSet.cs(17,21): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/StringSet.cs(23,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/StringSet.cs(28,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/double_array.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/double_array.cs(17,24): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/double_array.cs(23,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/double_array.cs(28,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/int_array.cs(14,10): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/int_array.cs(17,21): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/int_array.cs(23,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/int_array.cs(28,18): error CS0246: The type or namespace name `HandleRef' could not be found. Are you missing `System.Runtime.InteropServices' using directive?
csharp-files/libsbml.cs(16,48): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(65,54): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(134,52): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(182,48): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(199,36): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
csharp-files/libsbml.cs(389,52): error CS0246: The type or namespace name `IntPtr' could not be found. Are you missing `System' using directive?
CMake Error at /builddir/build/BUILD/libSBML-5.18.0-Source/src/bindings/csharp/compile-native-files.cmake:101 (message):
  Could not create the managed library

For the build logs, see:
https://copr-be.cloud.fedoraproject.org/results/@python/python3.8/fedora-rawhide-x86_64/00940603-libsbml/

For all our attempts to build libsbml with Python 3.8, see:
https://copr.fedorainfracloud.org/coprs/g/python/python3.8/package/libsbml/

Testing and mass rebuild of packages is happening in copr. You can follow these instructions to test locally in mock if your package builds with Python 3.8:
https://copr.fedorainfracloud.org/coprs/g/python/python3.8/

Let us know here if you have any questions.
Comment 1 Zbigniew Jędrzejewski-Szmek 2019-06-19 12:43:51 UTC 
Hmm, it builds fine here with rpm-4.14.90-0.git14653.15.fc31.x86_64 and python3-3.8.0~b1-1.fc31.x86_64, same gcc version as in copr. Maybe this is some copr issue or heisenbug?
Comment 2 Miro Hrončok 2019-06-19 12:58:26 UTC 
Trying again.
Comment 3 Zbigniew Jędrzejewski-Szmek 2019-07-12 13:23:05 UTC 
https://copr.fedorainfracloud.org/coprs/g/python/python3.8/build/960228/ passed.
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