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Bug 1948298 - Review Request: python-bluepyopt - The Blue Brain Python Optimisation Library
Summary: Review Request: python-bluepyopt - The Blue Brain Python Optimisation Library
Keywords:
Status: CLOSED ERRATA
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Robert-André Mauchin 🐧
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
: 1849706 (view as bug list)
Depends On:
Blocks: fedora-neuro
TreeView+ depends on / blocked
 
Reported: 2021-04-11 16:32 UTC by Ankur Sinha (FranciscoD)
Modified: 2021-04-24 20:12 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2021-04-23 19:01:43 UTC
Type: ---
Embargoed:
zebob.m: fedora-review+


Attachments (Terms of Use)

Description Ankur Sinha (FranciscoD) 2021-04-11 16:32:02 UTC
Spec URL: https://ankursinha.fedorapeople.org/python-bluepyopt/python-bluepyopt.spec
SRPM URL: https://ankursinha.fedorapeople.org/python-bluepyopt/python-bluepyopt-1.9.149-1.fc34.src.rpm

Description: 
The Blue Brain Python Optimisation Library (BluePyOpt) is an extensible
framework for data-driven model parameter optimisation that wraps and
standardises several existing open-source tools. It simplifies the task of
creating and sharing these optimisations, and the associated techniques and
knowledge. This is achieved by abstracting the optimisation and evaluation
tasks into various reusable and flexible discrete elements according to
established best-practices.


Fedora Account System Username: ankursinha

Comment 1 Ankur Sinha (FranciscoD) 2021-04-11 16:33:18 UTC
*** Bug 1849706 has been marked as a duplicate of this bug. ***

Comment 2 Robert-André Mauchin 🐧 2021-04-14 15:25:58 UTC
 - Consider adding the examples in %doc (split it in a doc subpackage if it's too big)

 - srcname is not defined:

%py_provides python3-%{srcname}

→

%py_provides python3-%{pypi_name}



Package approved. Please fix the aforementioned issues before import.


Package Review
==============

Legend:
[x] = Pass, [!] = Fail, [-] = Not applicable, [?] = Not evaluated
[ ] = Manual review needed



===== MUST items =====

Generic:
[x]: Package is licensed with an open-source compatible license and meets
     other legal requirements as defined in the legal section of Packaging
     Guidelines.
[x]: License field in the package spec file matches the actual license.
     Note: Checking patched sources after %prep for licenses. Licenses
     found: "Unknown or generated", "GNU Lesser General Public License,
     Version 3", "GNU Lesser General Public License v3.0 or later", "*No
     copyright* [generated file]", "*No copyright* GNU Lesser General
     Public License, Version 3". 188 files have unknown license. Detailed
     output of licensecheck in /home/bob/packaging/review/python-
     bluepyopt/review-python-bluepyopt/licensecheck.txt
[x]: Package contains no bundled libraries without FPC exception.
[x]: Changelog in prescribed format.
[x]: Sources contain only permissible code or content.
[-]: Package contains desktop file if it is a GUI application.
[-]: Development files must be in a -devel package
[x]: Package uses nothing in %doc for runtime.
[x]: Package consistently uses macros (instead of hard-coded directory
     names).
[x]: Package is named according to the Package Naming Guidelines.
[x]: Package does not generate any conflict.
[x]: Package obeys FHS, except libexecdir and /usr/target.
[-]: If the package is a rename of another package, proper Obsoletes and
     Provides are present.
[x]: Requires correct, justified where necessary.
[x]: Spec file is legible and written in American English.
[-]: Package contains systemd file(s) if in need.
[x]: Package is not known to require an ExcludeArch tag.
[-]: Large documentation must go in a -doc subpackage. Large could be size
     (~1MB) or number of files.
     Note: Documentation size is 20480 bytes in 1 files.
[x]: Package complies to the Packaging Guidelines
[x]: Package successfully compiles and builds into binary rpms on at least
     one supported primary architecture.
[x]: Package installs properly.
[x]: Rpmlint is run on all rpms the build produces.
     Note: There are rpmlint messages (see attachment).
[x]: If (and only if) the source package includes the text of the
     license(s) in its own file, then that file, containing the text of the
     license(s) for the package is included in %license.
[x]: Package requires other packages for directories it uses.
[x]: Package does not own files or directories owned by other packages.
[x]: Package uses either %{buildroot} or $RPM_BUILD_ROOT
[x]: Package does not run rm -rf %{buildroot} (or $RPM_BUILD_ROOT) at the
     beginning of %install.
[x]: Macros in Summary, %description expandable at SRPM build time.
[x]: Dist tag is present.
[x]: Package does not contain duplicates in %files.
[x]: Permissions on files are set properly.
[x]: Package use %makeinstall only when make install DESTDIR=... doesn't
     work.
[x]: Package is named using only allowed ASCII characters.
[x]: Package does not use a name that already exists.
[x]: Package is not relocatable.
[x]: Sources used to build the package match the upstream source, as
     provided in the spec URL.
[x]: Spec file name must match the spec package %{name}, in the format
     %{name}.spec.
[x]: File names are valid UTF-8.
[x]: Packages must not store files under /srv, /opt or /usr/local

Python:
[x]: Python eggs must not download any dependencies during the build
     process.
[x]: A package which is used by another package via an egg interface should
     provide egg info.
[x]: Package meets the Packaging Guidelines::Python
[x]: Package contains BR: python2-devel or python3-devel
[x]: Packages MUST NOT have dependencies (either build-time or runtime) on
     packages named with the unversioned python- prefix unless no properly
     versioned package exists. Dependencies on Python packages instead MUST
     use names beginning with python2- or python3- as appropriate.
[x]: Python packages must not contain %{pythonX_site(lib|arch)}/* in %files
[x]: Binary eggs must be removed in %prep

===== SHOULD items =====

Generic:
[-]: If the source package does not include license text(s) as a separate
     file from upstream, the packager SHOULD query upstream to include it.
[x]: Final provides and requires are sane (see attachments).
[?]: Package functions as described.
[x]: Latest version is packaged.
[x]: Package does not include license text files separate from upstream.
[-]: Sources are verified with gpgverify first in %prep if upstream
     publishes signatures.
     Note: gpgverify is not used.
[-]: Description and summary sections in the package spec file contains
     translations for supported Non-English languages, if available.
[x]: Package should compile and build into binary rpms on all supported
     architectures.
[x]: %check is present and all tests pass.
[x]: Packages should try to preserve timestamps of original installed
     files.
[x]: Reviewer should test that the package builds in mock.
[x]: Buildroot is not present
[x]: Package has no %clean section with rm -rf %{buildroot} (or
     $RPM_BUILD_ROOT)
[x]: No file requires outside of /etc, /bin, /sbin, /usr/bin, /usr/sbin.
[x]: Packager, Vendor, PreReq, Copyright tags should not be in spec file
[x]: Sources can be downloaded from URI in Source: tag
[x]: SourceX is a working URL.
[x]: Spec use %global instead of %define unless justified.

===== EXTRA items =====

Generic:
[x]: Rpmlint is run on all installed packages.
     Note: There are rpmlint messages (see attachment).
[x]: Spec file according to URL is the same as in SRPM.


Rpmlint
-------
Checking: python3-bluepyopt-1.9.149-1.fc35.noarch.rpm
          python-bluepyopt-1.9.149-1.fc35.src.rpm
python3-bluepyopt.noarch: E: devel-dependency neuron-devel
python3-bluepyopt.noarch: W: spelling-error Summary(en_US) Bluebrain -> Blue brain, Blue-brain, Lamebrain
python3-bluepyopt.noarch: W: spelling-error %description -l en_US optimisation -> optimization, improvisation, misapplication
python3-bluepyopt.noarch: W: spelling-error %description -l en_US standardises -> standardizes, standardize, standards
python3-bluepyopt.noarch: W: spelling-error %description -l en_US optimisations -> optimizations, optimization, improvisations
python3-bluepyopt.noarch: W: unexpanded-macro Provides python-%{srcname} = 1.9.149-1.fc35 %{srcname}
python3-bluepyopt.noarch: W: unexpanded-macro Provides python3-%{srcname} = 1.9.149-1.fc35 %{srcname}
python3-bluepyopt.noarch: W: unexpanded-macro Provides python3.9-%{srcname} = 1.9.149-1.fc35 %{srcname}
python3-bluepyopt.noarch: W: no-manual-page-for-binary bpopt_tasksdb
python-bluepyopt.src: W: spelling-error Summary(en_US) Bluebrain -> Blue brain, Blue-brain, Lamebrain
python-bluepyopt.src: W: spelling-error %description -l en_US optimisation -> optimization, improvisation, misapplication
python-bluepyopt.src: W: spelling-error %description -l en_US standardises -> standardizes, standardize, standards
python-bluepyopt.src: W: spelling-error %description -l en_US optimisations -> optimizations, optimization, improvisations
python-bluepyopt.src: W: invalid-url URL: https://github.com/BlueBrain/BluePyOpt <urlopen error timed out>
2 packages and 0 specfiles checked; 1 errors, 13 warnings.

Comment 3 Gwyn Ciesla 2021-04-14 16:02:50 UTC
(fedscm-admin):  The Pagure repository was created at https://src.fedoraproject.org/rpms/python-bluepyopt

Comment 4 Ankur Sinha (FranciscoD) 2021-04-14 16:28:21 UTC
Thanks for the quick review!

I've included the examples in a new sub-package, and corrected the py_provide macro usage.

Here are the updated SPEC/SRPM:

Spec URL: https://ankursinha.fedorapeople.org/python-bluepyopt/python-bluepyopt.spec
SRPM URL: https://ankursinha.fedorapeople.org/python-bluepyopt/python-bluepyopt-1.9.149-1.fc34.src.rpm

Importing to SCM now.


Cheers,
Ankur

Comment 5 Fedora Update System 2021-04-14 16:37:15 UTC
FEDORA-2021-70f967b242 has been submitted as an update to Fedora 33. https://bodhi.fedoraproject.org/updates/FEDORA-2021-70f967b242

Comment 6 Fedora Update System 2021-04-14 16:37:15 UTC
FEDORA-2021-78352aaa6a has been submitted as an update to Fedora 34. https://bodhi.fedoraproject.org/updates/FEDORA-2021-78352aaa6a

Comment 7 Fedora Update System 2021-04-15 15:14:28 UTC
FEDORA-2021-70f967b242 has been pushed to the Fedora 33 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2021-70f967b242 \*`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-70f967b242

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 8 Fedora Update System 2021-04-15 19:28:37 UTC
FEDORA-2021-78352aaa6a has been pushed to the Fedora 34 testing repository.
Soon you'll be able to install the update with the following command:
`sudo dnf install --enablerepo=updates-testing --advisory=FEDORA-2021-78352aaa6a \*`
You can provide feedback for this update here: https://bodhi.fedoraproject.org/updates/FEDORA-2021-78352aaa6a

See also https://fedoraproject.org/wiki/QA:Updates_Testing for more information on how to test updates.

Comment 9 Fedora Update System 2021-04-23 19:01:43 UTC
FEDORA-2021-70f967b242 has been pushed to the Fedora 33 stable repository.
If problem still persists, please make note of it in this bug report.

Comment 10 Fedora Update System 2021-04-24 20:12:01 UTC
FEDORA-2021-78352aaa6a has been pushed to the Fedora 34 stable repository.
If problem still persists, please make note of it in this bug report.


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