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Bug 2220011 - F39FailsToInstall: python3-h5py, python3-h5py-mpich, python3-h5py-openmpi
Summary: F39FailsToInstall: python3-h5py, python3-h5py-mpich, python3-h5py-openmpi
Keywords:
Status: CLOSED WORKSFORME
Alias: None
Product: Fedora
Classification: Fedora
Component: h5py
Version: rawhide
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Terje Røsten
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On:
Blocks: F39FailsToInstall PYTHON3.12 2219950 2219971 2219989 2220027 2220181 2220191 2220204 2220206 2220210 2220241 2220242 2220243 2220268 2220270 2220298 2220304 2220306 2220333 2220334 2220356 2220361 2220423 2220438 2220444 2220576
TreeView+ depends on / blocked
 
Reported: 2023-07-05 19:04 UTC by Fedora Fails To Install
Modified: 2023-07-13 11:32 UTC (History)
4 users (show)

Fixed In Version:
Doc Type: If docs needed, set a value
Doc Text:
Clone Of:
Environment:
Last Closed: 2023-07-13 11:32:41 UTC
Type: ---
Embargoed:

Attachments (Terms of Use)

Description Fedora Fails To Install 2023-07-05 19:04:42 UTC 
Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

Your package (h5py) Fails To Install in Fedora 39:

can't install python3-h5py:
  - nothing provides python(abi) = 3.11 needed by python3-h5py-3.8.0-1.fc39.x86_64
  - nothing provides python3.11dist(numpy) >= 1.14.5 needed by python3-h5py-3.8.0-1.fc39.x86_64
  
can't install python3-h5py-mpich:
  - nothing provides python(abi) = 3.11 needed by python3-h5py-mpich-3.8.0-1.fc39.x86_64
  
can't install python3-h5py-openmpi:
  - nothing provides python(abi) = 3.11 needed by python3-h5py-openmpi-3.8.0-1.fc39.x86_64
  
If you know about this problem and are planning on fixing it, please acknowledge so by setting the bug status to ASSIGNED. If you don't have time to maintain this package, consider orphaning it, so maintainers of dependent packages realize the problem.


If you don't react accordingly to the policy for FTBFS/FTI bugs (https://docs.fedoraproject.org/en-US/fesco/Fails_to_build_from_source_Fails_to_install/), your package may be orphaned in 8+ weeks.


P.S. The data was generated solely from koji buildroot, so it might be newer than the latest compose or the content on mirrors. To reproduce, use the koji/local repo only, e.g. in mock:

    $ mock -r fedora-39-x86_64 --config-opts mirrored=False install python3-h5py python3-h5py-mpich python3-h5py-openmpi


P.P.S. If this bug has been reported in the middle of upgrading multiple dependent packages, please consider using side tags: https://docs.fedoraproject.org/en-US/fesco/Updates_Policy/#updating-inter-dependent-packages

Thanks!
Comment 1 Miro Hrončok 2023-07-06 23:23:08 UTC 
h5py hangs when building.
Comment 2 Miro Hrončok 2023-07-11 13:22:56 UTC 
This hangs during openmpi tests. And other packages generally don't need the openmpi option. As a stopgap measure to unblock various other packages, we might consider disabling openmpi.



$ repoquery -q --repo=rawhide{,-source} --whatrequires python3-h5py-openmpi
bout++-0:5.0.0-6.fc39.src

$ repoquery -q --repo=rawhide{,-source} --whatrequires python3-h5py-mpich
bout++-0:5.0.0-6.fc39.src

$ repoquery -q --repo=rawhide{,-source} --whatrequires python3-h5py
PyMca-0:5.8.2-1.fc39.src
PyMca-0:5.8.2-1.fc39.x86_64
diffoscope-0:233-2.fc38.src
espresso-0:4.2.1-3.fc39.src
libsonata-0:0.1.11-12.fc39.src
morphio-0:3.3.3-5.fc39.src
python-dask-0:2023.4.1-1.fc39~bootstrap.src
python-dipy-0:1.5.0-4.fc38.src
python-emcee-0:3.1.4-1.fc39.src
python-exdir-0:0.4.2-5.fc38.src
python-fslpy-0:3.12.1-1.fc39.src
python-h5io-0:0.1.7-1.fc39.src
python-hdf5storage-0:0.1.18-8.fc38.src
python-hdmf-0:3.6.1-5.fc39.src
python-klusta-0:3.0.16-22.fc38.src
python-lazy-ops-0:0.2.0-6.fc38.src
python-lfpy-0:2.3-1.fc39.src
python-mne-0:1.3.1-1.fc39.src
python-nibabel-0:5.1.0-1.fc39.src
python-nixio-0:1.5.3-4.fc38.src
python-probeinterface-0:0.2.17-1.fc39.src
python-pymatreader-0:0.0.30-3.fc38.src
python-pynn-0:0.10.1-2.fc38.src
python-pynwb-0:2.1.0-2.fc38.src
python-pyqtgraph-0:0.13.3-2.fc39.src
python-pyscf-0:2.2.1-1.fc39.src
python-simframe-0:1.0.2-4.fc38.src
python-spyking-circus-0:1.1.0-5.fc38.src
python-zarr-0:2.14.1-1.fc39.src
python3-dipy-0:1.5.0-4.fc38.x86_64
python3-espresso-mpich-0:4.2.1-3.fc39.x86_64
python3-espresso-openmpi-0:4.2.1-3.fc39.x86_64
python3-fslpy-0:3.12.1-1.fc39.noarch
python3-h5io-0:0.1.7-1.fc39.noarch
python3-hdf5storage-0:0.1.18-8.fc38.noarch
python3-hdmf-0:3.6.1-5.fc39.noarch
python3-klusta-0:3.0.16-22.fc38.noarch
python3-lazy-ops-0:0.2.0-6.fc38.noarch
python3-lfpy-0:2.3-1.fc39.x86_64
python3-nixio-0:1.5.3-4.fc38.noarch
python3-pymatreader-0:0.0.30-3.fc38.noarch
python3-pynwb-0:2.1.0-2.fc38.noarch
python3-pyscf-0:2.2.1-1.fc39.x86_64
python3-simframe-0:1.0.2-4.fc38.noarch
python3-spyking-circus-0:1.1.0-5.fc38.noarch
python3-tvb-data-0:1.5.9-12.fc39.noarch
veusz-0:3.6.2-1.fc39.src
Comment 3 Miro Hrončok 2023-07-12 06:02:21 UTC 
https://src.fedoraproject.org/rpms/h5py/pull-request/6
Comment 4 Terje Røsten 2023-07-12 07:00:08 UTC 
Merged and built: 
 https://koji.fedoraproject.org/koji/taskinfo?taskID=103255705
Comment 5 Fedora Fails To Install 2023-07-13 11:32:41 UTC 
Hello,

Please note that this comment was generated automatically by https://pagure.io/releng/blob/main/f/scripts/ftbfs-fti/follow-policy.py
If you feel that this output has mistakes, please open an issue at https://pagure.io/releng/

All subpackages of a package against which this bug was filled are now installable or removed from Fedora 39.

Thanks for taking care of it!
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