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Bug 228970 - Review Request: elph - Tool to find motifs in a set of DNA or protein sequences
Summary: Review Request: elph - Tool to find motifs in a set of DNA or protein sequences
Keywords:
Status: CLOSED NEXTRELEASE
Alias: None
Product: Fedora
Classification: Fedora
Component: Package Review
Version: rawhide
Hardware: All
OS: Linux
medium
medium
Target Milestone: ---
Assignee: Parag AN(पराग)
QA Contact: Fedora Package Reviews List
URL:
Whiteboard:
Depends On:
Blocks: FE-ACCEPT 228971
TreeView+ depends on / blocked
 
Reported: 2007-02-16 10:16 UTC by Christian Iseli
Modified: 2007-11-30 22:11 UTC (History)
0 users

Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2007-02-24 00:19:48 UTC
Type: ---
Embargoed:
panemade: fedora-review+
dennis: fedora-cvs+

Attachments (Terms of Use)

Description Christian Iseli 2007-02-16 10:16:36 UTC 
Spec URL: ftp://ftp.licr.org/pub/elph.spec
SRPM URL: ftp://ftp.licr.org/pub/elph-1.0.1-0.src.rpm
Description:
ELPH is a general-purpose Gibbs sampler for finding motifs in a set of
DNA or protein sequences. The program takes as input a set containing
anywhere from a few dozen to thousands of sequences, and searches
through them for the most common motif, assuming that each sequence
contains one copy of the motif.
Comment 1 Parag AN(पराग) 2007-02-22 09:59:34 UTC 
Review:
+ package builds in mock (development i386).
+ rpmlint is silent for SRPM and RPM
+ source files match upstream.
eb96b4dde3ab12ba1f31a4230a829ff3  ELPH-1.0.1.tar.gz
+ package meets naming and packaging guidelines.
+ specfile is properly named, is cleanly written
+ Spec file is written in American English.
+ Spec file is legible.
+ dist tag is present.
+ build root is correct.
+ license is open source-compatible.
+ License text is included in package.
+ %doc is small; no -doc subpackage required.
+ %doc does not affect runtime.
+ BuildRequires are proper.
+ %clean is present.
+ package installed properly.
+ Macro use appears rather consistent.
+ Package contains code, not content.
+ no headers or static libraries.
+ no .pc file present.
+ no -devel subpackage exists.
+ no .la files.
+ no translations are available.
+ Does owns the directories it creates.
+ no duplicates in %files.
+ file permissions are appropriate.

APPROVED.
Comment 2 Christian Iseli 2007-02-22 13:22:31 UTC 
New Package CVS Request
=======================
Package Name: elph
Short Description: Tool to find motifs in a set of DNA or protein sequences
Owners: Christian.Iseli
Branches: FC-5 FC-6 devel
InitialCC:
Comment 3 Dennis Gilmore 2007-02-22 13:37:08 UTC 
Branched.

For the reviewer please set the fedora-review flag
Comment 4 Christian Iseli 2007-02-24 00:19:48 UTC 
Imported and built.

Thanks Parag for the review :-)
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