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Bug 999823 (python-scikit-learn_unbundling-tracker) - Remove bundled libraries from python-scikit-learn
Summary: Remove bundled libraries from python-scikit-learn
Keywords:
Status: CLOSED CURRENTRELEASE
Alias: python-scikit-learn_unbundling-tracker
Product: Fedora
Classification: Fedora
Component: python-scikit-learn
Version: 22
Hardware: Unspecified
OS: Unspecified
unspecified
unspecified
Target Milestone: ---
Assignee: Sergio Pascual
QA Contact: Fedora Extras Quality Assurance
URL:
Whiteboard:
Depends On: 1003394
Blocks: DuplicSysLibsTracker ML-SIG 976714
TreeView+ depends on / blocked
 
Reported: 2013-08-22 08:36 UTC by Tadej Janež
Modified: 2015-11-25 20:52 UTC (History)
3 users (show)

Fixed In Version:
Doc Type: Bug Fix
Doc Text:
Clone Of:
Environment:
Last Closed: 2015-11-25 20:52:57 UTC
Type: Bug
Embargoed:

Attachments (Terms of Use)

Description Tadej Janež 2013-08-22 08:36:50 UTC 
Description of problem:
As described in a post to the scikit-learn mailing list by Björn Esser yesterday [1], scikit-learn contains many bundled libraries that are not allowed by Fedora's packaging guidelines [2]:
* libsvm
* liblinear
* cblas from atlas
* blas (converted from Fortran to C using f2c)
* python-six (*)
* python-joblib

Please fix those by collaborating with the upstream authors.

(*) This is not bundled with the current version 0.13.1, but it will be with the recently released 0.14.
[1] http://sourceforge.net/mailarchive/message.php?msg_id=31313259
[2] https://fedoraproject.org/wiki/Packaging:No_Bundled_Libraries
Comment 1 Björn 'besser82' Esser 2013-09-14 11:51:41 UTC 
Any news on this, Sergio?
Comment 2 Sergio Pascual 2013-09-15 22:16:00 UTC 
I have unbundled cblas, blas and joblib in python-scikit-learn-0.14.1-2.fc21

To unbundle six we need it at version 1.4. I have pinged six maintainer but he hasn't answered yet.

I'm leaving libsvm and liblinear for later.
Comment 3 Sergio Pascual 2013-09-25 21:20:45 UTC 
Update, now we have the required six in f20 and rawhide. I have asked the maintainer to update in f19 and f18 also.

After the atlas update in rawhide, python-scikit-learn is broken, but I can't fix it until scipy is fixed also
Comment 4 Jaroslav Reznik 2015-03-03 14:59:52 UTC 
This bug appears to have been reported against 'rawhide' during the Fedora 22 development cycle.
Changing version to '22'.

More information and reason for this action is here:
https://fedoraproject.org/wiki/Fedora_Program_Management/HouseKeeping/Fedora22
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